<pre style='margin:0'>
Zero King (l2dy) pushed a commit to branch master
in repository macports-ports.
</pre>
<p><a href="https://github.com/macports/macports-ports/commit/0d5bf2885fb22356f1a569e87632f4297a463e82">https://github.com/macports/macports-ports/commit/0d5bf2885fb22356f1a569e87632f4297a463e82</a></p>
<pre style="white-space: pre; background: #F8F8F8">The following commit(s) were added to refs/heads/master by this push:
<span style='display:block; white-space:pre;color:#404040;'> new 0d5bf28 mcl: update to 14-137, update patch
</span>0d5bf28 is described below
<span style='display:block; white-space:pre;color:#808000;'>commit 0d5bf2885fb22356f1a569e87632f4297a463e82
</span>Author: Zero King <l2dy@macports.org>
AuthorDate: Sat Apr 8 05:20:00 2017 +0000
<span style='display:block; white-space:pre;color:#404040;'> mcl: update to 14-137, update patch
</span>---
science/mcl/Portfile | 8 ++--
science/mcl/files/C99.patch | 55 --------------------------
science/mcl/files/patch-src-impala-edge.h.diff | 24 +++++++++++
3 files changed, 28 insertions(+), 59 deletions(-)
<span style='display:block; white-space:pre;color:#808080;'>diff --git a/science/mcl/Portfile b/science/mcl/Portfile
</span><span style='display:block; white-space:pre;color:#808080;'>index 6cef26a..a67afba 100644
</span><span style='display:block; white-space:pre;background:#e0e0ff;'>--- a/science/mcl/Portfile
</span><span style='display:block; white-space:pre;background:#e0e0ff;'>+++ b/science/mcl/Portfile
</span><span style='display:block; white-space:pre;background:#e0e0e0;'>@@ -1,7 +1,7 @@
</span> PortSystem 1.0
name mcl
<span style='display:block; white-space:pre;background:#ffe0e0;'>-version 12-068
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+version 14-137
</span> description MCL - a cluster algorithm for graphs.
long_description \
The MCL algorithm is short for the Markov Cluster Algorithm, \
<span style='display:block; white-space:pre;background:#e0e0e0;'>@@ -13,9 +13,9 @@ license GPL-3
</span> platforms darwin
homepage http://micans.org/mcl/
master_sites http://micans.org/mcl/src/
<span style='display:block; white-space:pre;background:#ffe0e0;'>-checksums rmd160 f43c64da14ec4316a67d3a9987aecd1bef25298e \
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- sha256 11fd811a84e340faf1596ee5e1889457c87b4e172aa8b150bda3414f06f093c8
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+checksums rmd160 063e6415a0d23dcdb2fa8663fe62a95ec4f67f5d \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ sha256 b5786897a8a8ca119eb355a5630806a4da72ea84243dba85b19a86f14757b497
</span>
<span style='display:block; white-space:pre;background:#ffe0e0;'>-patchfiles C99.patch
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+patchfiles patch-src-impala-edge.h.diff
</span>
configure.args --enable-blast --mandir=${prefix}/share/man
<span style='display:block; white-space:pre;color:#808080;'>diff --git a/science/mcl/files/C99.patch b/science/mcl/files/C99.patch
</span>deleted file mode 100644
<span style='display:block; white-space:pre;color:#808080;'>index 2b31e58..0000000
</span><span style='display:block; white-space:pre;background:#e0e0ff;'>--- a/science/mcl/files/C99.patch
</span><span style='display:block; white-space:pre;background:#e0e0ff;'>+++ /dev/null
</span><span style='display:block; white-space:pre;background:#e0e0e0;'>@@ -1,55 +0,0 @@
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>---- src/impala/matrix.h.orig 2012-01-05 22:25:14.000000000 +1100
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+++ src/impala/matrix.h 2012-07-03 21:24:32.000000000 +1000
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-@@ -789,7 +789,7 @@ enum
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- mclv* mclgUnionv
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- ( mclx* mx /* mx->dom_rows used as scratch area */
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- , const mclv* dom_cols /* take union over these columns in mx */
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>--, const mclv* restrict /* only consider row entries in restrict */
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+, const mclv* restrictrows /* only consider row entries in restrict */
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- , mcxenum SCRATCH_STATUS /* if SCRATCH_READY also left SCRATCH_READY */
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- , mclv* dst
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- ) ;
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-@@ -810,7 +810,7 @@ mclv* mclgUnionv
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- mclv* mclgUnionv2 /* This one has a const matrix argument, additional scratch */
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- ( const mclx* mx
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- , const mclv* dom_cols
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>--, const mclv* restrict
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+, const mclv* restrictrows
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- , mcxenum SCRATCH_STATUS
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- , mclv* dst
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- , mclv* scratch
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>---- src/impala/matrix.c.orig 2012-01-07 02:26:46.000000000 +1100
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+++ src/impala/matrix.c 2012-07-03 21:25:56.000000000 +1000
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-@@ -1843,18 +1843,18 @@ dim mclxUnaryList
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- mclv* mclgUnionv
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- ( mclx* mx
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- , const mclv* coldom
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>--, const mclv* restrict
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+, const mclv* restrictrows
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- , mcxenum scratch_STATUS
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- , mclv* dst
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- )
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-- { return mclgUnionv2(mx, coldom, restrict, scratch_STATUS, dst, mx->dom_rows)
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+ { return mclgUnionv2(mx, coldom, restrictrows, scratch_STATUS, dst, mx->dom_rows)
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- ; }
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- mclv* mclgUnionv2
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- ( const mclx* mx
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- , const mclv* coldom
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>--, const mclv* restrict
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+, const mclv* restrictrows
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- , mcxenum scratch_STATUS
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- , mclv* dst
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- , mclv* scratch
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-@@ -1899,8 +1899,8 @@ mclv* mclgUnionv2
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- )
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- continue /* SNH if coldom is subset of mx->dom_cols */
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- ; if
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-- ( restrict
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-- && 0 > (o_restrict = mclvGetIvpOffset(restrict, idx, o_restrict))
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+ ( restrictrows
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+ && 0 > (o_restrict = mclvGetIvpOffset(restrictrows, idx, o_restrict))
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- )
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- continue /* not found in restriction domain */
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-
</span><span style='display:block; white-space:pre;color:#808080;'>diff --git a/science/mcl/files/patch-src-impala-edge.h.diff b/science/mcl/files/patch-src-impala-edge.h.diff
</span>new file mode 100644
<span style='display:block; white-space:pre;color:#808080;'>index 0000000..83f6e06
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>--- /dev/null
</span><span style='display:block; white-space:pre;background:#e0e0ff;'>+++ b/science/mcl/files/patch-src-impala-edge.h.diff
</span><span style='display:block; white-space:pre;background:#e0e0e0;'>@@ -0,0 +1,24 @@
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+--- src/impala/edge.h.orig 2014-04-12 23:01:04.000000000 +0000
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>++++ src/impala/edge.h 2017-04-08 04:56:25.000000000 +0000
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+@@ -70,8 +70,8 @@
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ mclv* mclgUnionv
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ ( mclx* mx /* mx->dom_rows used as scratch area */
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+-, const mclv* dom_cols /* take union over these columns in mx */
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+-, const mclv* restrict /* only consider row entries in restrict */
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>++, const mclv* coldom /* take union over these columns in mx */
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>++, const mclv* confine /* only consider row entries in restrict */
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ , mcxenum SCRATCH_STATUS /* if SCRATCH_READY also left SCRATCH_READY */
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ , mclv* dst
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ ) ;
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+@@ -91,8 +91,8 @@
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ mclv* mclgUnionv2 /* This one has a const matrix argument, additional scratch */
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ ( const mclx* mx
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+-, const mclv* dom_cols
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+-, const mclv* restrict
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>++, const mclv* coldom
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>++, const mclv* confine
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ , mcxenum SCRATCH_STATUS
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ , mclv* dst
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ , mclv* scratch
</span></pre><pre style='margin:0'>
</pre>