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Rainer Müller (raimue) pushed a commit to branch master
in repository macports-ports.

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<p><a href="https://github.com/macports/macports-ports/commit/e1e19a08227222d59901151ad8fcb5aa5c157e78">https://github.com/macports/macports-ports/commit/e1e19a08227222d59901151ad8fcb5aa5c157e78</a></p>
<pre style="white-space: pre; background: #F8F8F8">The following commit(s) were added to refs/heads/master by this push:
<span style='display:block; white-space:pre;color:#404040;'>     new e1e19a0  pysam: use bundled htslib instead of system lib
</span>e1e19a0 is described below

<span style='display:block; white-space:pre;color:#808000;'>commit e1e19a08227222d59901151ad8fcb5aa5c157e78
</span>Author: David Seifert <SoapZA@users.noreply.github.com>
AuthorDate: Wed Oct 11 09:51:26 2017 -0700

<span style='display:block; white-space:pre;color:#404040;'>    pysam: use bundled htslib instead of system lib
</span><span style='display:block; white-space:pre;color:#404040;'>    
</span><span style='display:block; white-space:pre;color:#404040;'>    * pysam follows upstream htslib changes, but is generally
</span><span style='display:block; white-space:pre;color:#404040;'>      1-2 months behind and using an htslib-(X+1) with a pysam
</span><span style='display:block; white-space:pre;color:#404040;'>      designed around htslib-X is discouraged.
</span>---
 python/py-pysam/Portfile | 11 ++---------
 1 file changed, 2 insertions(+), 9 deletions(-)

<span style='display:block; white-space:pre;color:#808080;'>diff --git a/python/py-pysam/Portfile b/python/py-pysam/Portfile
</span><span style='display:block; white-space:pre;color:#808080;'>index 3da5392..e38be40 100644
</span><span style='display:block; white-space:pre;background:#e0e0ff;'>--- a/python/py-pysam/Portfile
</span><span style='display:block; white-space:pre;background:#e0e0ff;'>+++ b/python/py-pysam/Portfile
</span><span style='display:block; white-space:pre;background:#e0e0e0;'>@@ -6,6 +6,7 @@ PortGroup           python 1.0
</span> name                py-pysam
 set realname        pysam
 version             0.12.0.1
<span style='display:block; white-space:pre;background:#e0ffe0;'>+revision            1
</span> categories-append   science
 platforms           darwin
 license             MIT BSD
<span style='display:block; white-space:pre;background:#e0e0e0;'>@@ -31,18 +32,10 @@ patchfiles          patch-pysam-remove-RPATH.diff
</span> if {${name} ne ${subport}} {
     depends_build       port:py${python.version}-setuptools \
                         port:py${python.version}-cython
<span style='display:block; white-space:pre;background:#ffe0e0;'>-    depends_lib-append  port:htslib
</span>     livecheck.type      none
 } else {
     livecheck.name      pysam
     livecheck.regex     pysam-(\\d+(\\.\\d+)+)${extract.suffix}
 }
 
<span style='display:block; white-space:pre;background:#ffe0e0;'>-post-patch {
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-    # delete htslib, just to be safe
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-    file delete -force htslib
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-}
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-configure.env       HTSLIB_MODE="external" \
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-                    HTSLIB_INCLUDE_DIR="${prefix}"/include \
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-                    HTSLIB_LIBRARY_DIR="${prefix}"/lib
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+configure.env       HTSLIB_MODE="shared"
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