<pre style='margin:0'>
Marcus Calhoun-Lopez (MarcusCalhoun-Lopez) pushed a commit to branch master
in repository macports-ports.
</pre>
<p><a href="https://github.com/macports/macports-ports/commit/b0a4b73a59b591a7a4cbecb127e304c28c1686a3">https://github.com/macports/macports-ports/commit/b0a4b73a59b591a7a4cbecb127e304c28c1686a3</a></p>
<pre style="white-space: pre; background: #F8F8F8"><span style='display:block; white-space:pre;color:#808000;'>commit b0a4b73a59b591a7a4cbecb127e304c28c1686a3
</span>Author: Marcus Calhoun-Lopez <mcalhoun@macports.org>
AuthorDate: Sun Jan 27 11:05:54 2019 -0700
<span style='display:block; white-space:pre;color:#404040;'> samtools: use configure script
</span>---
science/samtools/Portfile | 16 +++++-----------
1 file changed, 5 insertions(+), 11 deletions(-)
<span style='display:block; white-space:pre;color:#808080;'>diff --git a/science/samtools/Portfile b/science/samtools/Portfile
</span><span style='display:block; white-space:pre;color:#808080;'>index 9e83788..a66704d 100644
</span><span style='display:block; white-space:pre;background:#e0e0ff;'>--- a/science/samtools/Portfile
</span><span style='display:block; white-space:pre;background:#e0e0ff;'>+++ b/science/samtools/Portfile
</span><span style='display:block; white-space:pre;background:#e0e0e0;'>@@ -4,6 +4,7 @@ PortSystem 1.0
</span> PortGroup github 1.0
github.setup samtools samtools 1.9
<span style='display:block; white-space:pre;background:#e0ffe0;'>+revision 1
</span> categories science
platforms darwin
maintainers {ryandesign @ryandesign} openmaintainer
<span style='display:block; white-space:pre;background:#e0e0e0;'>@@ -26,18 +27,14 @@ use_bzip2 yes
</span>
depends_lib port:ncurses \
port:xz \
<span style='display:block; white-space:pre;background:#e0ffe0;'>+ port:htslib \
</span> port:zlib
<span style='display:block; white-space:pre;background:#ffe0e0;'>-use_configure no
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+configure.args-append --enable-configure-htslib=no \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ --with-htslib=system
</span>
<span style='display:block; white-space:pre;background:#ffe0e0;'>-variant universal {}
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-build.args CC="${configure.cc} [get_canonical_archflags cc]"
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-destroot {
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- xinstall -m 755 ${worksrcpath}/samtools ${destroot}${prefix}/bin
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+post-destroot {
</span> xinstall -m 644 ${worksrcpath}/libbam.a ${destroot}${prefix}/lib
<span style='display:block; white-space:pre;background:#ffe0e0;'>- xinstall -m 644 ${worksrcpath}/samtools.1 ${destroot}${prefix}/share/man/man1
</span> xinstall -d ${destroot}${prefix}/include/bam
xinstall -m 644 {*}[glob ${worksrcpath}/*.h] ${destroot}${prefix}/include/bam
<span style='display:block; white-space:pre;background:#e0e0e0;'>@@ -49,6 +46,3 @@ destroot {
</span>
test.run yes
test.target check
<span style='display:block; white-space:pre;background:#ffe0e0;'>-test.args {*}${build.args}
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-depends_test-append port:htslib
</span></pre><pre style='margin:0'>
</pre>