<pre style='margin:0'>
Marcus Calhoun-Lopez (MarcusCalhoun-Lopez) pushed a commit to branch master
in repository macports-ports.
</pre>
<p><a href="https://github.com/macports/macports-ports/commit/124187f318c8f020dface944b1105af6830eac4c">https://github.com/macports/macports-ports/commit/124187f318c8f020dface944b1105af6830eac4c</a></p>
<pre style="white-space: pre; background: #F8F8F8"><span style='display:block; white-space:pre;color:#808000;'>commit 124187f318c8f020dface944b1105af6830eac4c
</span>Author: Marcus Calhoun-Lopez <mcalhoun@macports.org>
AuthorDate: Sat Aug 10 06:22:39 2019 -0700
<span style='display:block; white-space:pre;color:#404040;'> bowtie: reformat code
</span>---
science/bowtie/Portfile | 67 +++++++++++++++++++++++++------------------------
1 file changed, 34 insertions(+), 33 deletions(-)
<span style='display:block; white-space:pre;color:#808080;'>diff --git a/science/bowtie/Portfile b/science/bowtie/Portfile
</span><span style='display:block; white-space:pre;color:#808080;'>index 0a1050d..33562db 100644
</span><span style='display:block; white-space:pre;background:#e0e0ff;'>--- a/science/bowtie/Portfile
</span><span style='display:block; white-space:pre;background:#e0e0ff;'>+++ b/science/bowtie/Portfile
</span><span style='display:block; white-space:pre;background:#e0e0e0;'>@@ -1,33 +1,33 @@
</span> # -*- coding: utf-8; mode: tcl; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- vim:fenc=utf-8:ft=tcl:et:sw=4:ts=4:sts=4
<span style='display:block; white-space:pre;background:#ffe0e0;'>-PortSystem 1.0
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-PortGroup github 1.0
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+PortSystem 1.0
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+PortGroup github 1.0
</span>
<span style='display:block; white-space:pre;background:#ffe0e0;'>-name bowtie
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-github.setup BenLangmead bowtie 1.2.2_p1 v
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-revision 2
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-categories science biology
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-platforms darwin
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-maintainers {mcalhoun @MarcusCalhoun-Lopez} openmaintainer
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-license Artistic-1 LGPL-3+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+name bowtie
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+github.setup BenLangmead bowtie 1.2.2_p1 v
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+revision 2
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+categories science biology
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+platforms darwin
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+maintainers {mcalhoun @MarcusCalhoun-Lopez} openmaintainer
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+license Artistic-1 LGPL-3+
</span>
<span style='display:block; white-space:pre;background:#ffe0e0;'>-description an ultrafast, memory-efficient short read aligner
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+description an ultrafast, memory-efficient short read aligner
</span>
<span style='display:block; white-space:pre;background:#ffe0e0;'>-long_description Bowtie is ${description}. It aligns short DNA sequences \
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- (reads) to the human genome at a rate of over 25 million \
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- 35-bp reads per hour. Bowtie indexes the genome with a \
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- Burrows-Wheeler index to keep its memory footprint small: \
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- typically about 2.2 GB for the human genome (2.9 GB for \
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- paired-end).
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+long_description Bowtie is ${description}. It aligns short DNA sequences \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ (reads) to the human genome at a rate of over 25 million \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ 35-bp reads per hour. Bowtie indexes the genome with a \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ Burrows-Wheeler index to keep its memory footprint small: \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ typically about 2.2 GB for the human genome (2.9 GB for \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ paired-end).
</span>
<span style='display:block; white-space:pre;background:#ffe0e0;'>-homepage http://bowtie-bio.sourceforge.net/
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+homepage http://bowtie-bio.sourceforge.net/
</span>
<span style='display:block; white-space:pre;background:#ffe0e0;'>-checksums rmd160 9f818e1e85abaf09ddc58cbe96f9cf735f0ca918 \
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- sha256 ed1581d6ed97271e6de2c1f826a3169f1d5495461cd6f31b2b8f02e5e4adeebf \
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- size 7890653
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+checksums rmd160 9f818e1e85abaf09ddc58cbe96f9cf735f0ca918 \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ sha256 ed1581d6ed97271e6de2c1f826a3169f1d5495461cd6f31b2b8f02e5e4adeebf \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ size 7890653
</span>
<span style='display:block; white-space:pre;background:#ffe0e0;'>-patchfiles-append patch-Makefile.diff \
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- patch-seqan.diff
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+patchfiles-append patch-Makefile.diff \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ patch-seqan.diff
</span>
post-patch {
reinplace -W ${worksrcpath} \
<span style='display:block; white-space:pre;background:#e0e0e0;'>@@ -37,26 +37,27 @@ post-patch {
</span> bowtie-inspect
}
<span style='display:block; white-space:pre;background:#ffe0e0;'>-supported_archs x86_64 ppc64
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-installs_libs no
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+supported_archs x86_64 ppc64
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+installs_libs no
</span>
<span style='display:block; white-space:pre;background:#ffe0e0;'>-depends_build-append port:seqan-1
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+depends_build-append port:seqan-1
</span>
<span style='display:block; white-space:pre;background:#ffe0e0;'>-depends_lib-append port:zlib \
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- port:tbb
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+depends_lib-append port:zlib \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ port:tbb
</span>
<span style='display:block; white-space:pre;background:#ffe0e0;'>-depends_run-append port:python27
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+depends_run-append port:python27
</span>
# replicate values from Makefile prior to patching
<span style='display:block; white-space:pre;background:#ffe0e0;'>-configure.optflags -O3
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-configure.cppflags-prepend -I${prefix}/include/seqan-1
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+configure.optflags -O3
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+configure.cppflags-prepend \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ -I${prefix}/include/seqan-1
</span>
<span style='display:block; white-space:pre;background:#ffe0e0;'>-configure.cmd printenv
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+configure.cmd printenv
</span> configure.pre_args
configure.universal_args
<span style='display:block; white-space:pre;background:#ffe0e0;'>-configure.post_args {>> Makefile.macports.inc}
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+configure.post_args {>> Makefile.macports.inc}
</span>
<span style='display:block; white-space:pre;background:#ffe0e0;'>-destroot.args-append prefix=${prefix}
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+destroot.args-append prefix=${prefix}
</span>
post-destroot {
xinstall -d ${destroot}${prefix}/share/doc/${name}
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