<pre style='margin:0'>
Marcus Calhoun-Lopez (MarcusCalhoun-Lopez) pushed a commit to branch master
in repository macports-ports.

</pre>
<p><a href="https://github.com/macports/macports-ports/commit/124187f318c8f020dface944b1105af6830eac4c">https://github.com/macports/macports-ports/commit/124187f318c8f020dface944b1105af6830eac4c</a></p>
<pre style="white-space: pre; background: #F8F8F8"><span style='display:block; white-space:pre;color:#808000;'>commit 124187f318c8f020dface944b1105af6830eac4c
</span>Author: Marcus Calhoun-Lopez <mcalhoun@macports.org>
AuthorDate: Sat Aug 10 06:22:39 2019 -0700

<span style='display:block; white-space:pre;color:#404040;'>    bowtie: reformat code
</span>---
 science/bowtie/Portfile | 67 +++++++++++++++++++++++++------------------------
 1 file changed, 34 insertions(+), 33 deletions(-)

<span style='display:block; white-space:pre;color:#808080;'>diff --git a/science/bowtie/Portfile b/science/bowtie/Portfile
</span><span style='display:block; white-space:pre;color:#808080;'>index 0a1050d..33562db 100644
</span><span style='display:block; white-space:pre;background:#e0e0ff;'>--- a/science/bowtie/Portfile
</span><span style='display:block; white-space:pre;background:#e0e0ff;'>+++ b/science/bowtie/Portfile
</span><span style='display:block; white-space:pre;background:#e0e0e0;'>@@ -1,33 +1,33 @@
</span> # -*- coding: utf-8; mode: tcl; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- vim:fenc=utf-8:ft=tcl:et:sw=4:ts=4:sts=4
 
<span style='display:block; white-space:pre;background:#ffe0e0;'>-PortSystem          1.0
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-PortGroup           github 1.0
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+PortSystem              1.0
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+PortGroup               github 1.0
</span> 
<span style='display:block; white-space:pre;background:#ffe0e0;'>-name                bowtie
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-github.setup        BenLangmead bowtie 1.2.2_p1 v
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-revision            2
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-categories          science biology
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-platforms           darwin
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-maintainers         {mcalhoun @MarcusCalhoun-Lopez} openmaintainer
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-license             Artistic-1 LGPL-3+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+name                    bowtie
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+github.setup            BenLangmead bowtie 1.2.2_p1 v
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+revision                2
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+categories              science biology
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+platforms               darwin
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+maintainers             {mcalhoun @MarcusCalhoun-Lopez} openmaintainer
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+license                 Artistic-1 LGPL-3+
</span> 
<span style='display:block; white-space:pre;background:#ffe0e0;'>-description         an ultrafast, memory-efficient short read aligner
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+description             an ultrafast, memory-efficient short read aligner
</span> 
<span style='display:block; white-space:pre;background:#ffe0e0;'>-long_description    Bowtie is ${description}. It aligns short DNA sequences \
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-                    (reads) to the human genome at a rate of over 25 million \
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-                    35-bp reads per hour. Bowtie indexes the genome with a \
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-                    Burrows-Wheeler index to keep its memory footprint small: \
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-                    typically about 2.2 GB for the human genome (2.9 GB for \
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-                    paired-end).
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+long_description        Bowtie is ${description}. It aligns short DNA sequences \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+                        (reads) to the human genome at a rate of over 25 million \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+                        35-bp reads per hour. Bowtie indexes the genome with a \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+                        Burrows-Wheeler index to keep its memory footprint small: \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+                        typically about 2.2 GB for the human genome (2.9 GB for \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+                        paired-end).
</span> 
<span style='display:block; white-space:pre;background:#ffe0e0;'>-homepage            http://bowtie-bio.sourceforge.net/
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+homepage                http://bowtie-bio.sourceforge.net/
</span> 
<span style='display:block; white-space:pre;background:#ffe0e0;'>-checksums           rmd160  9f818e1e85abaf09ddc58cbe96f9cf735f0ca918 \
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-                    sha256  ed1581d6ed97271e6de2c1f826a3169f1d5495461cd6f31b2b8f02e5e4adeebf \
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-                    size    7890653
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+checksums               rmd160  9f818e1e85abaf09ddc58cbe96f9cf735f0ca918 \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+                        sha256  ed1581d6ed97271e6de2c1f826a3169f1d5495461cd6f31b2b8f02e5e4adeebf \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+                        size    7890653
</span> 
<span style='display:block; white-space:pre;background:#ffe0e0;'>-patchfiles-append   patch-Makefile.diff \
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-                    patch-seqan.diff
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+patchfiles-append       patch-Makefile.diff \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+                        patch-seqan.diff
</span> 
 post-patch {
     reinplace -W ${worksrcpath} \
<span style='display:block; white-space:pre;background:#e0e0e0;'>@@ -37,26 +37,27 @@ post-patch {
</span>         bowtie-inspect
 }
 
<span style='display:block; white-space:pre;background:#ffe0e0;'>-supported_archs     x86_64 ppc64
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-installs_libs          no
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+supported_archs         x86_64 ppc64
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+installs_libs              no
</span> 
<span style='display:block; white-space:pre;background:#ffe0e0;'>-depends_build-append port:seqan-1
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+depends_build-append    port:seqan-1
</span> 
<span style='display:block; white-space:pre;background:#ffe0e0;'>-depends_lib-append  port:zlib \
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-                    port:tbb
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+depends_lib-append      port:zlib \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+                        port:tbb
</span> 
<span style='display:block; white-space:pre;background:#ffe0e0;'>-depends_run-append  port:python27
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+depends_run-append      port:python27
</span> 
 # replicate values from Makefile prior to patching
<span style='display:block; white-space:pre;background:#ffe0e0;'>-configure.optflags  -O3
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-configure.cppflags-prepend -I${prefix}/include/seqan-1
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+configure.optflags      -O3
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+configure.cppflags-prepend \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+                        -I${prefix}/include/seqan-1
</span> 
<span style='display:block; white-space:pre;background:#ffe0e0;'>-configure.cmd       printenv
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+configure.cmd           printenv
</span> configure.pre_args
 configure.universal_args
<span style='display:block; white-space:pre;background:#ffe0e0;'>-configure.post_args {>> Makefile.macports.inc}
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+configure.post_args     {>> Makefile.macports.inc}
</span> 
<span style='display:block; white-space:pre;background:#ffe0e0;'>-destroot.args-append prefix=${prefix}
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+destroot.args-append    prefix=${prefix}
</span> 
 post-destroot {
     xinstall -d ${destroot}${prefix}/share/doc/${name}
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