<pre style='margin:0'>
Renee Otten (reneeotten) pushed a commit to branch master
in repository macports-ports.
</pre>
<p><a href="https://github.com/macports/macports-ports/commit/3fc99bafa02ba271bee90e60454953817f781c92">https://github.com/macports/macports-ports/commit/3fc99bafa02ba271bee90e60454953817f781c92</a></p>
<pre style="white-space: pre; background: #F8F8F8"><span style='display:block; white-space:pre;color:#808000;'>commit 3fc99bafa02ba271bee90e60454953817f781c92
</span>Author: Renee Otten <reneeotten@macports.org>
AuthorDate: Sun Dec 1 19:46:35 2019 -0500
<span style='display:block; white-space:pre;color:#404040;'> pynmr: remove port
</span><span style='display:block; white-space:pre;color:#404040;'>
</span><span style='display:block; white-space:pre;color:#404040;'> - upstream is gone and the python26 version is not useful since pymol
</span><span style='display:block; white-space:pre;color:#404040;'> does not have a python26 variant.
</span>---
science/pynmr/Portfile | 61 ------------------------------------------
science/pynmr/files/pynmr.diff | 38 --------------------------
2 files changed, 99 deletions(-)
<span style='display:block; white-space:pre;color:#808080;'>diff --git a/science/pynmr/Portfile b/science/pynmr/Portfile
</span>deleted file mode 100644
<span style='display:block; white-space:pre;color:#808080;'>index 737cb17..0000000
</span><span style='display:block; white-space:pre;background:#e0e0ff;'>--- a/science/pynmr/Portfile
</span><span style='display:block; white-space:pre;background:#e0e0ff;'>+++ /dev/null
</span><span style='display:block; white-space:pre;background:#e0e0e0;'>@@ -1,61 +0,0 @@
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-# -*- coding: utf-8; mode: tcl; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- vim:fenc=utf-8:ft=tcl:et:sw=4:ts=4:sts=4
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-PortSystem 1.0
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-PortGroup python 1.0
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-name pynmr
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-version 0.37f
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-revision 1
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-categories science chemistry
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-maintainers {gmail.com:howarth.at.macports @jwhowarth}
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-description NMR plugin for pymol
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-long_description PyNMR features loading multiple pdb files, dihedral restraints checks, \
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- NOE restraints checks, and superimposition. PyNMR was written by Leigh Willard.
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-homepage http://pelican.rsvs.ulaval.ca/mediawiki/index.php/PyNMR
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-platforms darwin
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-master_sites http://diablo.ucsc.edu/~wgscott/pymol/
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-distname ${name}_${version}_src
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-checksums rmd160 53f40a547a5ef0a9c0725491c988b3e8bcb8706c \
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- sha256 f45dc0b736b5e05dcf873173604dcef9c39d8fb18d28d2fd195c4e08b148f00a \
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- size 224998
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-python.default_version 26
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-patchfiles pynmr.diff
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-depends_build port:swig-python
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-depends_lib port:meschach port:pymol
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-# pymol is not universal
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-universal_variant no
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-use_configure no
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-use_parallel_build no
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-use_bzip2 yes
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-build.dir ${worksrcpath}/pmg_tk/startup/pynmr
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-build.cmd ./run.macos
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-build.target
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-post-patch {
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- reinplace "s|@PREFIX@|${prefix}|g" ${build.dir}/run.macos \
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- ${build.dir}/test_data/test.script
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- reinplace "s|Numeric import|numpy.oldnumeric import|g" ${build.dir}/SVDSuperimposer.py \
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- ${build.dir}/rmsd.py
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- reinplace "s|LinearAlgebra import|numpy.oldnumeric.linear_algebra import|g" ${build.dir}/SVDSuperimposer.py
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- reinplace "s|import MLab|import numpy.oldnumeric.mlab as MLab|g" ${build.dir}/rmsd.py
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-}
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-destroot {
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- xinstall -d ${destroot}${python.pkgd}/pmg_tk/startup/pynmr
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- xinstall -m 644 ${worksrcpath}/pmg_tk/startup/plug_nmr.py ${destroot}${python.pkgd}/pmg_tk/startup
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- xinstall -m 644 -W ${build.dir} Crmsd.so BIOPYTHON_LICENSE LICENSE README ${destroot}${python.pkgd}/pmg_tk/startup/pynmr
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- foreach d {help images test_data} {
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- copy ${build.dir}/${d} ${destroot}${python.pkgd}/pmg_tk/startup/pynmr
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- }
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- xinstall -m 644 {*}[glob ${build.dir}/*.py] ${destroot}${python.pkgd}/pmg_tk/startup/pynmr
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-}
</span><span style='display:block; white-space:pre;color:#808080;'>diff --git a/science/pynmr/files/pynmr.diff b/science/pynmr/files/pynmr.diff
</span>deleted file mode 100644
<span style='display:block; white-space:pre;color:#808080;'>index 1c69d2e..0000000
</span><span style='display:block; white-space:pre;background:#e0e0ff;'>--- a/science/pynmr/files/pynmr.diff
</span><span style='display:block; white-space:pre;background:#e0e0ff;'>+++ /dev/null
</span><span style='display:block; white-space:pre;background:#e0e0e0;'>@@ -1,38 +0,0 @@
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>---- pmg_tk/startup/pynmr/Crmsd.i.org 2009-08-17 22:47:39.000000000 -0400
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+++ pmg_tk/startup/pynmr/Crmsd.i 2009-08-17 22:47:48.000000000 -0400
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-@@ -4,6 +4,7 @@
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- %array_functions(char *, charArray);
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- %array_functions(int, intArray);
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- %{
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+extern char * C_do_best_range(char*, char*, char*, char*, char*, double);
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- %}
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- extern char * C_do_best_range(char*, char*, char*, char*, char*, double);
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>---- pmg_tk/startup/pynmr/run.macos.org 2006-04-06 10:10:45.000000000 -0400
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+++ pmg_tk/startup/pynmr/run.macos 2009-04-03 21:04:39.000000000 -0400
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-@@ -1,4 +1,4 @@
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>--/Users/leigh/pynmr/swig/swig -python -I/Users/leigh/pynmr/swig/Lib/ -I/Users/leigh/pynmr/swig/Lib/python Crmsd.i
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+@PREFIX@/bin/swig -python Crmsd.i
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- # now fix the error that swig produces...
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- sed -e '/SWIG_init/s/init_/init/' -e '/SWIG_name/s/_Crmsd/Crmsd/ ' Crmsd_wrap.c > Crmsd_wrap2.c
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-@@ -8,8 +8,8 @@
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- #gcc -c Crmsd.c Crmsd_wrap.c -I../../../meschach -I/usr/include/python2.3 -lm
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- #gcc -shared Crmsd.o Crmsd_wrap.o meschach.a -o Crmsd.so
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>--gcc -fno-common -c Crmsd.c Crmsd_wrap.c -I/Users/leigh/pynmr/meschach -I/usr/include/python2.3 -D_POSIX_C_SOURCE
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>--gcc -bundle -flat_namespace -L/usr/include/python2.3 Crmsd.o Crmsd_wrap.o /Users/leigh/pynmr/meschach/meschach.a -lPython -o Crmsd.so
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+gcc -O3 -fno-common -c Crmsd.c Crmsd_wrap.c -I@PREFIX@/include/meschach -I@PREFIX@/Library/Frameworks/Python.framework/Versions/2.6/include/python2.6 -D_POSIX_C_SOURCE
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+gcc -O3 -bundle -bundle_loader @PREFIX@/bin/python2.6 -flat_namespace -undefined suppress Crmsd.o Crmsd_wrap.o -L@PREFIX@/lib -lmeschach -o Crmsd.so
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>---- pmg_tk/startup/pynmr/test_data/test.script.org 2009-04-04 00:49:35.000000000 -0400
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+++ pmg_tk/startup/pynmr/test_data/test.script 2009-04-04 00:52:04.000000000 -0400
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-@@ -6,5 +6,5 @@
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- pairfit=0)
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- nmr_cmd.C_do_best_range('test_1', 'C N CA', \
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- "test_1 test_2 test_3", "all", \
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-- "/home2/leigh/Proj/pynmr/pmg_tk/startup/pynmr/test_data/", 1.0)
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+ "@PREFIX@/lib/pymol/modules/pmg_tk/startup/pynmr/test_data", 1.0)
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-
</span></pre><pre style='margin:0'>
</pre>