<pre style='margin:0'>
Enrico Maria Crisostomo (emcrisostomo) pushed a commit to branch master
in repository macports-ports.
</pre>
<p><a href="https://github.com/macports/macports-ports/commit/7aa0bc405c7766246ce37de84216f4b92d56bd80">https://github.com/macports/macports-ports/commit/7aa0bc405c7766246ce37de84216f4b92d56bd80</a></p>
<pre style="white-space: pre; background: #F8F8F8"><span style='display:block; white-space:pre;color:#808000;'>commit 7aa0bc405c7766246ce37de84216f4b92d56bd80
</span>Author: Renee Otten <reneeotten@macports.org>
AuthorDate: Wed Mar 4 09:10:42 2020 -0500
<span style='display:block; white-space:pre;color:#404040;'> cdhit: new port, version 4.8.1
</span>---
science/cdhit/Portfile | 56 +++++++++++++++++++++++++++++++++
science/cdhit/files/patch-Makefile.diff | 30 ++++++++++++++++++
2 files changed, 86 insertions(+)
<span style='display:block; white-space:pre;color:#808080;'>diff --git a/science/cdhit/Portfile b/science/cdhit/Portfile
</span>new file mode 100644
<span style='display:block; white-space:pre;color:#808080;'>index 0000000..f866d87
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>--- /dev/null
</span><span style='display:block; white-space:pre;background:#e0e0ff;'>+++ b/science/cdhit/Portfile
</span><span style='display:block; white-space:pre;background:#e0e0e0;'>@@ -0,0 +1,56 @@
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+# -*- coding: utf-8; mode: tcl; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- vim:fenc=utf-8:ft=tcl:et:sw=4:ts=4:sts=4
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+PortSystem 1.0
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+PortGroup github 1.0
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+github.setup weizhongli cdhit 4.8.1 V
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+github.tarball_from archive
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+name cdhit
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+revision 0
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+categories science
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+platforms darwin
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+license GPL-2
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+maintainers {reneeotten @reneeotten} openmaintainer
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+description A program for clustering and comparing protein or nucleotide sequences
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+long_description ${description}
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+homepage http://weizhongli-lab.org/cd-hit/
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+checksums rmd160 d45a8d8567c3ab02d4dc2a80af613b3df4597400 \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ sha256 f8bc3cdd7aebb432fcd35eed0093e7a6413f1e36bbd2a837ebc06e57cdb20b70 \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ size 945639
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+depends_lib port:zlib
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+depends_run bin:perl:perl5
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+patchfiles patch-Makefile.diff
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+post-patch {
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ reinplace "s|@@PREFIX@@|${prefix}|g" ${worksrcpath}/Makefile
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ reinplace "s|#!/usr/bin/perl|#!${prefix}/bin/perl|g" {*}[glob ${worksrcpath}/*.pl]
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+}
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+variant openmp description "enable OpenMP parallel acceleration" {}
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+if {[variant_isset openmp]} {
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ compiler.openmp_version 2.5
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+} else {
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ build.args-append openmp=no
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+}
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+use_configure no
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+build.env CXX=${configure.cxx} \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ CXXFLAGS=${configure.cxxflags}
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+post-destroot {
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ set docdir ${prefix}/share/doc/${name}
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ xinstall -d ${destroot}${docdir}
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ xinstall -m 0644 -W ${worksrcpath} license.txt README \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ ChangeLog ${destroot}${docdir}
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ xinstall -m 0644 -W ${worksrcpath}/doc cdhit-user-guide.pdf \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ ${destroot}${docdir}
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+}
</span><span style='display:block; white-space:pre;color:#808080;'>diff --git a/science/cdhit/files/patch-Makefile.diff b/science/cdhit/files/patch-Makefile.diff
</span>new file mode 100644
<span style='display:block; white-space:pre;color:#808080;'>index 0000000..316173f
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>--- /dev/null
</span><span style='display:block; white-space:pre;background:#e0e0ff;'>+++ b/science/cdhit/files/patch-Makefile.diff
</span><span style='display:block; white-space:pre;background:#e0e0e0;'>@@ -0,0 +1,30 @@
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+Patch to fix two issues:
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+- upstream does: CC = g++
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+In order to keep the Makefile the same we set CC = $(CXX)
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+- install target
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+Add DESTDIR so that the destroot phase works properly
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+--- Makefile.orig 2020-03-04 21:45:27.000000000 -0500
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>++++ Makefile 2020-03-04 21:50:00.000000000 -0500
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+@@ -1,6 +1,4 @@
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+-CC = g++ -Wall -ggdb
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+-CC = g++ -pg
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+-CC = g++
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>++CC = $(CXX)
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ # default with OpenMP
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ # with OpenMP
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+@@ -99,10 +97,10 @@
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ cdhit-454.o: cdhit-454.c++ cdhit-common.h
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ $(CC) $(CCFLAGS) cdhit-454.c++ -c
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+-PREFIX ?= /usr/local/bin
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>++PREFIX ?= @@PREFIX@@
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ install:
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ for prog in $(PROGS); do \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+- install -m 0755 $$prog $(PREFIX); \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>++ install -m 0755 $$prog $(DESTDIR)$(PREFIX)/bin; \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ done
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+- install -m 0755 *.pl $(PREFIX);
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>++ install -m 0755 *.pl $(DESTDIR)$(PREFIX)/bin;
</span></pre><pre style='margin:0'>
</pre>