<pre style='margin:0'>
Enrico Maria Crisostomo (emcrisostomo) pushed a commit to branch master
in repository macports-ports.
</pre>
<p><a href="https://github.com/macports/macports-ports/commit/3fd956e0478277cc02ca5aec85740a130e1bd137">https://github.com/macports/macports-ports/commit/3fd956e0478277cc02ca5aec85740a130e1bd137</a></p>
<pre style="white-space: pre; background: #F8F8F8"><span style='display:block; white-space:pre;color:#808000;'>commit 3fd956e0478277cc02ca5aec85740a130e1bd137
</span>Author: Renee Otten <reneeotten@macports.org>
AuthorDate: Mon Mar 2 17:52:54 2020 -0500
<span style='display:block; white-space:pre;color:#404040;'> muscle: new port, version 3.8.1551
</span>---
science/muscle/Portfile | 39 ++++++++++++++++++++++++++++++++
science/muscle/files/patch-Makefile.diff | 26 +++++++++++++++++++++
2 files changed, 65 insertions(+)
<span style='display:block; white-space:pre;color:#808080;'>diff --git a/science/muscle/Portfile b/science/muscle/Portfile
</span>new file mode 100644
<span style='display:block; white-space:pre;color:#808080;'>index 0000000..f5d42b3
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>--- /dev/null
</span><span style='display:block; white-space:pre;background:#e0e0ff;'>+++ b/science/muscle/Portfile
</span><span style='display:block; white-space:pre;background:#e0e0e0;'>@@ -0,0 +1,39 @@
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+# -*- coding: utf-8; mode: tcl; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- vim:fenc=utf-8:ft=tcl:et:sw=4:ts=4:sts=4
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+PortSystem 1.0
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+name muscle
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+version 3.8.1551
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+revision 0
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+categories science
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+platforms darwin
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+license public-domain
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+maintainers {reneeotten @reneeotten} openmaintainer
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+description A program for multiple sequence alignment with high accuracy and high throughput
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+long_description ${description}
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+homepage https://drive5.com/muscle
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+master_sites ${homepage}
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+distname muscle_src_${version}
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+checksums rmd160 3fe31297b1aed972fc95f0c238129e918e4d0197 \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ sha256 c70c552231cd3289f1bad51c9bd174804c18bb3adcf47f501afec7a68f9c482e \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ size 190019
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+extract.mkdir yes
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+patchfiles patch-Makefile.diff
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+use_configure no
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+build.env CXX=${configure.cxx}
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+destroot {
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ xinstall -m 0755 -W ${worksrcpath} muscle ${destroot}${prefix}/bin
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+}
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+livecheck.type regex
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+livecheck.url ${homepage}/downloads.htm
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+livecheck.regex ${name}_src_(\[0-9.\]+)${extract.suffix}
</span><span style='display:block; white-space:pre;color:#808080;'>diff --git a/science/muscle/files/patch-Makefile.diff b/science/muscle/files/patch-Makefile.diff
</span>new file mode 100644
<span style='display:block; white-space:pre;color:#808080;'>index 0000000..04e2301
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>--- /dev/null
</span><span style='display:block; white-space:pre;background:#e0e0ff;'>+++ b/science/muscle/files/patch-Makefile.diff
</span><span style='display:block; white-space:pre;background:#e0e0e0;'>@@ -0,0 +1,26 @@
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+--- Makefile.orig 2020-03-02 22:27:18.000000000 -0500
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>++++ Makefile 2020-03-02 22:27:24.000000000 -0500
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+@@ -9,9 +9,8 @@
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ # On OSX, using -static gives the error "ld: can't locate file for: -lcrt0.o",
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ # this is fixed by deleting "-static" from the LDLIBS line.
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+-CFLAGS = -O3 -funroll-loops -Winline -DNDEBUG=1
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+-LDLIBS = -lm -static
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+-# LDLIBS = -lm
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>++CFLAGS += -O3 -funroll-loops -Winline -DNDEBUG=1
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>++LDLIBS = -lm
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ OBJ = .o
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ EXE =
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+@@ -19,9 +18,9 @@
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ RM = rm -f
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ CP = cp
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+-GPP = g++
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>++GPP = $(CXX)
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ LD = $(GPP) $(CFLAGS)
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+-CPP = $(GPP) -c $(CFLAGS)
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>++CPP = $(GPP) -c $(CFLAGS)
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ all: muscle
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
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