<pre style='margin:0'>
Frank Schima (mf2k) pushed a commit to branch master
in repository macports-ports.
</pre>
<p><a href="https://github.com/macports/macports-ports/commit/6e97617b9adf8e36cbbb3edf3e5368449813be9c">https://github.com/macports/macports-ports/commit/6e97617b9adf8e36cbbb3edf3e5368449813be9c</a></p>
<pre style="white-space: pre; background: #F8F8F8"><span style='display:block; white-space:pre;color:#808000;'>commit 6e97617b9adf8e36cbbb3edf3e5368449813be9c
</span>Author: David Seifert <SoapZA@users.noreply.github.com>
AuthorDate: Mon Mar 9 00:41:23 2020 +0100
<span style='display:block; white-space:pre;color:#404040;'> py-pysam: update to 0.15.4
</span>---
python/py-pysam/Portfile | 13 +-
.../files/patch-pysam-fix-missing-files.diff | 222 ---------------------
2 files changed, 7 insertions(+), 228 deletions(-)
<span style='display:block; white-space:pre;color:#808080;'>diff --git a/python/py-pysam/Portfile b/python/py-pysam/Portfile
</span><span style='display:block; white-space:pre;color:#808080;'>index e3c5c6f..b89cf2e 100644
</span><span style='display:block; white-space:pre;background:#e0e0ff;'>--- a/python/py-pysam/Portfile
</span><span style='display:block; white-space:pre;background:#e0e0ff;'>+++ b/python/py-pysam/Portfile
</span><span style='display:block; white-space:pre;background:#e0e0e0;'>@@ -5,8 +5,8 @@ PortGroup python 1.0
</span>
name py-pysam
set realname pysam
<span style='display:block; white-space:pre;background:#ffe0e0;'>-version 0.15.1
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-revision 1
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+version 0.15.4
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+revision 0
</span> categories-append science
platforms darwin
license MIT BSD
<span style='display:block; white-space:pre;background:#e0e0e0;'>@@ -22,19 +22,20 @@ homepage https://pypi.python.org/pypi/${realname}
</span> master_sites pypi:p/${realname}
distname ${realname}-${version}
<span style='display:block; white-space:pre;background:#ffe0e0;'>-checksums rmd160 f44ed399f80325bb084d254a3d16d97c6bc25f0f \
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- sha256 658421124c2f3de1b7445e03ca8413df0077f67ea9980abdaab0d1b5f7a8936f \
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- size 3220356
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+checksums rmd160 9ed516489fef88f37047168aa1d126177a7f8fee \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ sha256 a535e15cbd6e27f4ab74cabca30ca1df7eea283cb91d3b536d47fe113fee066f \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ size 1605385
</span>
python.versions 27 36 37
patchfiles patch-pysam-remove-RPATH.diff
<span style='display:block; white-space:pre;background:#ffe0e0;'>-patchfiles patch-pysam-fix-missing-files.diff
</span>
if {${name} ne ${subport}} {
depends_build port:py${python.version}-setuptools \
port:py${python.version}-cython
<span style='display:block; white-space:pre;background:#e0ffe0;'>+ use_parallel_build no
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span> depends_lib-append port:bzip2 \
port:curl \
port:xz \
<span style='display:block; white-space:pre;color:#808080;'>diff --git a/python/py-pysam/files/patch-pysam-fix-missing-files.diff b/python/py-pysam/files/patch-pysam-fix-missing-files.diff
</span>deleted file mode 100644
<span style='display:block; white-space:pre;color:#808080;'>index 5c5a0b0..0000000
</span><span style='display:block; white-space:pre;background:#e0e0ff;'>--- a/python/py-pysam/files/patch-pysam-fix-missing-files.diff
</span><span style='display:block; white-space:pre;background:#e0e0ff;'>+++ /dev/null
</span><span style='display:block; white-space:pre;background:#e0e0e0;'>@@ -1,222 +0,0 @@
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>---- /dev/null
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+++ htslib/os/lzma_stub.h
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-@@ -0,0 +1,85 @@
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+#ifndef LZMA_STUB_H
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+#define LZMA_STUB_H
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+/* Some platforms, notably macOS, ship a usable liblzma shared library but
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+ do not ship any LZMA header files. The <lzma.h> and <lzma/{*}.h> header
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+ files that come with the library contain the following statement:
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+ *
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+ * Author: Lasse Collin
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+ *
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+ * This file has been put into the public domain.
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+ * You can do whatever you want with this file.
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+ *
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+ Accordingly the following declarations have been copied and distilled
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+ from <lzma/base.h> and <lzma/container.h> (primarily) and are sufficient
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+ to compile cram/cram_io.c in the absence of proper LZMA headers.
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+ This file, lzma_stub.h, remains in the public domain. */
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+#include <stdint.h>
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+#ifdef __cplusplus
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+extern "C" {
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+#endif
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+typedef enum { LZMA_OK = 0, LZMA_STREAM_END = 1 } lzma_ret;
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+typedef enum { LZMA_RUN = 0, LZMA_FINISH = 3 } lzma_action;
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+typedef enum { LZMA_CHECK_CRC32 = 1 } lzma_check;
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+typedef enum { LZMA_RESERVED_ENUM = 0 } lzma_reserved_enum;
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+struct lzma_allocator;
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+struct lzma_internal;
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+typedef struct {
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+ const uint8_t *next_in;
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+ size_t avail_in;
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+ uint64_t total_in;
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+ uint8_t *next_out;
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+ size_t avail_out;
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+ uint64_t total_out;
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+ const struct lzma_allocator *allocator;
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+ struct lzma_internal *internal;
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+ void *reserved_ptr1;
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+ void *reserved_ptr2;
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+ void *reserved_ptr3;
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+ void *reserved_ptr4;
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+ uint64_t reserved_int1;
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+ uint64_t reserved_int2;
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+ size_t reserved_int3;
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+ size_t reserved_int4;
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+ lzma_reserved_enum reserved_enum1;
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+ lzma_reserved_enum reserved_enum2;
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+} lzma_stream;
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+#define LZMA_STREAM_INIT \
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+ { NULL, 0, 0, NULL, 0, 0, NULL, NULL, \
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+ NULL, NULL, NULL, NULL, 0, 0, 0, 0, \
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+ LZMA_RESERVED_ENUM, LZMA_RESERVED_ENUM }
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+extern size_t lzma_stream_buffer_bound(size_t uncompressed_size);
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+extern lzma_ret lzma_easy_buffer_encode(
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+ uint32_t preset, lzma_check check,
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+ const struct lzma_allocator *allocator,
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+ const uint8_t *in, size_t in_size,
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+ uint8_t *out, size_t *out_pos, size_t out_size);
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+extern lzma_ret lzma_stream_decoder(
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+ lzma_stream *strm, uint64_t memlimit, uint32_t flags);
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+extern uint64_t lzma_easy_decoder_memusage(uint32_t preset);
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+extern lzma_ret lzma_code(lzma_stream *strm, lzma_action action);
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+extern void lzma_end(lzma_stream *strm);
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+#ifdef __cplusplus
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+}
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+#endif
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+#endif
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>---- /dev/null
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+++ htslib/os/rand.c
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-@@ -0,0 +1,97 @@
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+/* rand.c -- drand48 implementation from the FreeBSD source tree. */
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+// This file is an amalgamation of the many small files in FreeBSD to do with
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+// drand48 and friends implementations.
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+// It comprises _rand48.c, rand48.h, srand48.c, drand48.c, erand48.c, lrand48.c
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+/*
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+ * Copyright (c) 1993 Martin Birgmeier
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+ * All rights reserved.
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+ *
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+ * You may redistribute unmodified or modified versions of this source
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+ * code provided that the above copyright notice and this and the
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+ * following conditions are retained.
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+ *
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+ * This software is provided ``as is'', and comes with no warranties
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+ * of any kind. I shall in no event be liable for anything that happens
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+ * to anyone/anything when using this software.
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+ */
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+//#include <sys/cdefs.h>
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+//__FBSDID("$FreeBSD: src/lib/libc/gen/_rand48.c,v 1.2 2002/03/22 21:52:05 obrien Exp $");
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+#include <math.h>
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+#define RAND48_SEED_0 (0x330e)
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+#define RAND48_SEED_1 (0xabcd)
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+#define RAND48_SEED_2 (0x1234)
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+#define RAND48_MULT_0 (0xe66d)
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+#define RAND48_MULT_1 (0xdeec)
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+#define RAND48_MULT_2 (0x0005)
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+#define RAND48_ADD (0x000b)
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+static unsigned short _rand48_seed[3] = {
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+ RAND48_SEED_0,
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+ RAND48_SEED_1,
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+ RAND48_SEED_2
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+};
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+static unsigned short _rand48_mult[3] = {
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+ RAND48_MULT_0,
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+ RAND48_MULT_1,
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+ RAND48_MULT_2
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+};
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+static unsigned short _rand48_add = RAND48_ADD;
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+static void
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+_dorand48(unsigned short xseed[3])
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+{
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+ unsigned long accu;
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+ unsigned short temp[2];
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+ accu = (unsigned long) _rand48_mult[0] * (unsigned long) xseed[0] +
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+ (unsigned long) _rand48_add;
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+ temp[0] = (unsigned short) accu; /* lower 16 bits */
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+ accu >>= sizeof(unsigned short) * 8;
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+ accu += (unsigned long) _rand48_mult[0] * (unsigned long) xseed[1] +
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+ (unsigned long) _rand48_mult[1] * (unsigned long) xseed[0];
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+ temp[1] = (unsigned short) accu; /* middle 16 bits */
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+ accu >>= sizeof(unsigned short) * 8;
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+ accu += _rand48_mult[0] * xseed[2] + _rand48_mult[1] * xseed[1] + _rand48_mult[2] * xseed[0];
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+ xseed[0] = temp[0];
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+ xseed[1] = temp[1];
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+ xseed[2] = (unsigned short) accu;
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+}
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+void
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+hts_srand48(long seed)
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+{
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+ _rand48_seed[0] = RAND48_SEED_0;
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+ _rand48_seed[1] = (unsigned short) seed;
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+ _rand48_seed[2] = (unsigned short) (seed >> 16);
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+ _rand48_mult[0] = RAND48_MULT_0;
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+ _rand48_mult[1] = RAND48_MULT_1;
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+ _rand48_mult[2] = RAND48_MULT_2;
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+ _rand48_add = RAND48_ADD;
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+}
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+double
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+hts_erand48(unsigned short xseed[3])
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+{
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+ _dorand48(xseed);
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+ return ldexp((double) xseed[0], -48) +
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+ ldexp((double) xseed[1], -32) +
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+ ldexp((double) xseed[2], -16);
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+}
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+double
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+hts_drand48(void)
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+{
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+ return hts_erand48(_rand48_seed);
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+}
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+long
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+hts_lrand48(void)
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+{
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+ _dorand48(_rand48_seed);
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+ return ((long) _rand48_seed[2] << 15) + ((long) _rand48_seed[1] >> 1);
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+}
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>---- /dev/null
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+++ htslib/version.sh
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-@@ -0,0 +1,31 @@
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+#!/bin/sh
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+# Master version, for use in tarballs or non-git source copies
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+VERSION=1.9
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+# If we have a git clone, then check against the current tag
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+if [ -e .git ]
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+then
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+ # If we ever get to 10.x this will need to be more liberal
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+ VERSION=`git describe --match '[0-9].[0-9]*' --dirty`
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+fi
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+# Numeric version is for use in .dylib or .so libraries
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+#
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+# Follows the same logic from the Makefile commit c2e93911
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+# as non-numeric versions get bumped to patch level 255 to indicate
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+# an unknown value.
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+if [ "$1" = "numeric" ]
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+then
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+ v1=`expr "$VERSION" : '\([0-9]*\)'`
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+ v2=`expr "$VERSION" : '[0-9]*.\([0-9]*\)'`
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+ v3=`expr "$VERSION" : '[0-9]*.[0-9]*.\([0-9]*\)'`
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+ if [ -z "`expr "$VERSION" : '^\([0-9.]*\)$'`" ]
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+ then
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+ VERSION="$v1.$v2.255"
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+ else
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+ VERSION="$v1.$v2${v3:+.}$v3"
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+ fi
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+fi
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+echo $VERSION
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