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Renee Otten (reneeotten) pushed a commit to branch master
in repository macports-ports.

</pre>
<p><a href="https://github.com/macports/macports-ports/commit/7eabd81af9530839d7cae05e5f81e3b9fbcd6cd7">https://github.com/macports/macports-ports/commit/7eabd81af9530839d7cae05e5f81e3b9fbcd6cd7</a></p>
<pre style="white-space: pre; background: #F8F8F8">The following commit(s) were added to refs/heads/master by this push:
<span style='display:block; white-space:pre;color:#404040;'>     new 7eabd81  py-pysam: fix permissions
</span>7eabd81 is described below

<span style='display:block; white-space:pre;color:#808000;'>commit 7eabd81af9530839d7cae05e5f81e3b9fbcd6cd7
</span>Author: Renee Otten <reneeotten@macports.org>
AuthorDate: Wed Apr 1 06:41:37 2020 -0400

<span style='display:block; white-space:pre;color:#404040;'>    py-pysam: fix permissions
</span><span style='display:block; white-space:pre;color:#404040;'>    
</span><span style='display:block; white-space:pre;color:#404040;'>    - use python.rootname and default livecheck
</span><span style='display:block; white-space:pre;color:#404040;'>    - update homepage
</span><span style='display:block; white-space:pre;color:#404040;'>    - remove replaced_by code for old subports
</span><span style='display:block; white-space:pre;color:#404040;'>    
</span><span style='display:block; white-space:pre;color:#404040;'>    Closes: https://trac.macports.org/ticket/60238
</span>---
 python/py-pysam/Portfile | 32 +++++++++++++++-----------------
 1 file changed, 15 insertions(+), 17 deletions(-)

<span style='display:block; white-space:pre;color:#808080;'>diff --git a/python/py-pysam/Portfile b/python/py-pysam/Portfile
</span><span style='display:block; white-space:pre;color:#808080;'>index 84ada6f..90bca2e 100644
</span><span style='display:block; white-space:pre;background:#e0e0ff;'>--- a/python/py-pysam/Portfile
</span><span style='display:block; white-space:pre;background:#e0e0ff;'>+++ b/python/py-pysam/Portfile
</span><span style='display:block; white-space:pre;background:#e0e0e0;'>@@ -4,9 +4,9 @@ PortSystem          1.0
</span> PortGroup           python 1.0
 
 name                py-pysam
<span style='display:block; white-space:pre;background:#ffe0e0;'>-set realname        pysam
</span> version             0.15.4
<span style='display:block; white-space:pre;background:#ffe0e0;'>-revision            0
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+revision            1
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span> categories-append   science
 platforms           darwin
 license             MIT BSD
<span style='display:block; white-space:pre;background:#e0e0e0;'>@@ -17,10 +17,7 @@ description         Python interface for the SAM/BAM sequence \
</span> long_description    Pysam is a python module for reading and manipulating \
                     Samfiles. It's a lightweight wrapper of the samtools C-API.
 
<span style='display:block; white-space:pre;background:#ffe0e0;'>-homepage            https://pypi.python.org/pypi/${realname}
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-master_sites        pypi:p/${realname}
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-distname            ${realname}-${version}
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+homepage            https://github.com/pysam-developers/pysam
</span> 
 checksums           rmd160  9ed516489fef88f37047168aa1d126177a7f8fee \
                     sha256  a535e15cbd6e27f4ab74cabca30ca1df7eea283cb91d3b536d47fe113fee066f \
<span style='display:block; white-space:pre;background:#e0e0e0;'>@@ -41,17 +38,18 @@ if {${name} ne ${subport}} {
</span>                         port:xz \
                         port:zlib
 
<span style='display:block; white-space:pre;background:#ffe0e0;'>-    livecheck.type      none
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-} else {
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-    livecheck.name      pysam
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-    livecheck.regex     pysam-(\\d+(\\.\\d+)+)${extract.suffix}
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-}
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+    post-extract {
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+        # Fix permissions
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+        fs-traverse item ${worksrcpath} {
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+            if {[file isdirectory ${item}]} {
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+                file attributes ${item} -permissions a+rx
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+            } elseif {[file isfile ${item}]} {
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+                file attributes ${item} -permissions a+r
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+            }
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+        }
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+    }
</span> 
<span style='display:block; white-space:pre;background:#ffe0e0;'>-configure.env       HTSLIB_MODE=shared
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+    livecheck.type      none
</span> 
<span style='display:block; white-space:pre;background:#ffe0e0;'>-foreach {old new} {34 36 35 36} {
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-    subport py${old}-${python.rootname} "
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-        replaced_by py${new}-${python.rootname}
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-        PortGroup obsolete 1.0
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-    "
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+    configure.env       HTSLIB_MODE=shared
</span> }
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