<pre style='margin:0'>
Chris Jones (cjones051073) pushed a commit to branch master
in repository macports-ports.
</pre>
<p><a href="https://github.com/macports/macports-ports/commit/23acba4e3ee34afcc17e72e58650c5377b486bf5">https://github.com/macports/macports-ports/commit/23acba4e3ee34afcc17e72e58650c5377b486bf5</a></p>
<pre style="white-space: pre; background: #F8F8F8">The following commit(s) were added to refs/heads/master by this push:
<span style='display:block; white-space:pre;color:#404040;'> new 23acba4 raxml: respect MacPorts settings & Xcode workaround
</span>23acba4 is described below
<span style='display:block; white-space:pre;color:#808000;'>commit 23acba4e3ee34afcc17e72e58650c5377b486bf5
</span>Author: Marcus Calhoun-Lopez <mcalhoun@macports.org>
AuthorDate: Sun May 17 08:53:39 2020 -0700
<span style='display:block; white-space:pre;color:#404040;'> raxml: respect MacPorts settings & Xcode workaround
</span>---
science/raxml/Portfile | 8 +-
science/raxml/files/Makefiles.patch | 120 ----------
science/raxml/files/patch-Makefiles.diff | 380 +++++++++++++++++++++++++++++++
3 files changed, 385 insertions(+), 123 deletions(-)
<span style='display:block; white-space:pre;color:#808080;'>diff --git a/science/raxml/Portfile b/science/raxml/Portfile
</span><span style='display:block; white-space:pre;color:#808080;'>index 9945f96..1c520ce 100644
</span><span style='display:block; white-space:pre;background:#e0e0ff;'>--- a/science/raxml/Portfile
</span><span style='display:block; white-space:pre;background:#e0e0ff;'>+++ b/science/raxml/Portfile
</span><span style='display:block; white-space:pre;background:#e0e0e0;'>@@ -3,9 +3,11 @@
</span> PortSystem 1.0
PortGroup github 1.0
PortGroup mpi 1.0
<span style='display:block; white-space:pre;background:#e0ffe0;'>+PortGroup xcode_workaround 1.0
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+PortGroup makefile 1.0
</span>
github.setup stamatak standard-RAxML 7.7.6 v
<span style='display:block; white-space:pre;background:#ffe0e0;'>-revision 1
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+revision 2
</span> checksums sha256 7562b307bc50e38162f104271793a1c8f98f866c2342bea21afe6df6a982fd82 \
rmd160 da76d6623515b7d8f78a69aaf4eec713508789af
name raxml
<span style='display:block; white-space:pre;background:#e0e0e0;'>@@ -22,7 +24,8 @@ platforms darwin
</span> compilers.choose cc
mpi.setup
<span style='display:block; white-space:pre;background:#ffe0e0;'>-use_configure no
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+# respect MacPorts settings
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+patchfiles-append patch-Makefiles.diff
</span>
#Strings used by the variant options
set HPCm ""
<span style='display:block; white-space:pre;background:#e0e0e0;'>@@ -94,7 +97,6 @@ if {${build_arch} eq "i386" || ${build_arch} eq "x86_64"} {
</span> #Make sure we are using the correct Makefile for this variant combo
pre-build {
build.pre_args -f Makefile${EXTm}${HPCm}.gcc
<span style='display:block; white-space:pre;background:#ffe0e0;'>- build.args-append CC="${configure.cc}"
</span> }
#We only need the single raxml binary
<span style='display:block; white-space:pre;color:#808080;'>diff --git a/science/raxml/files/Makefiles.patch b/science/raxml/files/Makefiles.patch
</span>deleted file mode 100644
<span style='display:block; white-space:pre;color:#808080;'>index 71dff8d..0000000
</span><span style='display:block; white-space:pre;background:#e0e0ff;'>--- a/science/raxml/files/Makefiles.patch
</span><span style='display:block; white-space:pre;background:#e0e0ff;'>+++ /dev/null
</span><span style='display:block; white-space:pre;background:#e0e0e0;'>@@ -1,120 +0,0 @@
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>---- Makefile.MPI.gcc.orig 2011-04-07 06:42:34.000000000 +1000
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+++ Makefile.MPI.gcc 2012-06-21 09:01:59.000000000 +1000
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-@@ -3,7 +3,7 @@
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- CC = mpicc
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>--CFLAGS = -D_WAYNE_MPI -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -msse
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+CFLAGS = -D_WAYNE_MPI -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -msse $(EXTRA_CFLAGS)
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- LIBRARIES = -lm
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-@@ -17,7 +17,7 @@
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- GLOBAL_DEPS = axml.h globalVariables.h
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- raxmlHPC-MPI : $(objs)
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-- $(CC) -o raxmlHPC-MPI $(objs) $(LIBRARIES)
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+ $(CC) $(LDFLAGS) -o raxmlHPC-MPI $(objs) $(LIBRARIES)
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- classify.o : classify.c $(GLOBAL_DEPS)
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- evaluatePartialSpecialGeneric.o : evaluatePartialSpecialGeneric.c $(GLOBAL_DEPS)
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>---- Makefile.PTHREADS.gcc.orig 2011-04-07 06:42:34.000000000 +1000
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+++ Makefile.PTHREADS.gcc 2012-06-21 09:01:51.000000000 +1000
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-@@ -4,7 +4,7 @@
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- CC = gcc
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>--CFLAGS = -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -D_USE_PTHREADS -msse
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+CFLAGS = -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -D_USE_PTHREADS -msse $(EXTRA_CFLAGS)
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- LIBRARIES = -lm -pthread
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-@@ -18,7 +18,7 @@
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- GLOBAL_DEPS = axml.h globalVariables.h
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- raxmlHPC-PTHREADS : $(objs)
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-- $(CC) -o raxmlHPC-PTHREADS $(objs) $(LIBRARIES)
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+ $(CC) $(LDFLAGS) -o raxmlHPC-PTHREADS $(objs) $(LIBRARIES)
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- classify.o : classify.c $(GLOBAL_DEPS)
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- evaluatePartialSpecialGeneric.o : evaluatePartialSpecialGeneric.c $(GLOBAL_DEPS)
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>---- Makefile.SSE3.MPI.gcc.orig 2012-06-21 09:01:23.000000000 +1000
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+++ Makefile.SSE3.MPI.gcc 2012-06-21 09:01:34.000000000 +1000
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-@@ -2,7 +2,7 @@
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- CC = mpicc
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>--CFLAGS = -D_WAYNE_MPI -D__SIM_SSE3 -O2 -D_GNU_SOURCE -msse3 -fomit-frame-pointer -funroll-loops
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+CFLAGS = -D_WAYNE_MPI -D__SIM_SSE3 -O2 -D_GNU_SOURCE -msse3 -fomit-frame-pointer -funroll-loops $(EXTRA_CFLAGS)
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- LIBRARIES = -lm
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-@@ -15,7 +15,7 @@
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- GLOBAL_DEPS = axml.h globalVariables.h
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- raxmlHPC-MPI-SSE3 : $(objs)
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-- $(CC) -o raxmlHPC-MPI-SSE3 $(objs) $(LIBRARIES)
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+ $(CC) $(LDFLAGS) -o raxmlHPC-MPI-SSE3 $(objs) $(LIBRARIES)
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- classify.o : classify.c $(GLOBAL_DEPS)
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- evaluatePartialSpecialGeneric.o : evaluatePartialSpecialGeneric.c $(GLOBAL_DEPS)
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>---- Makefile.SSE3.PTHREADS.gcc.orig 2011-04-07 06:42:34.000000000 +1000
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+++ Makefile.SSE3.PTHREADS.gcc 2012-06-21 09:00:59.000000000 +1000
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-@@ -3,7 +3,7 @@
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- CC = gcc
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>--CFLAGS = -D_USE_PTHREADS -D__SIM_SSE3 -O2 -D_GNU_SOURCE -msse3 -fomit-frame-pointer -funroll-loops #-Wall -pedantic -Wunused-parameter -Wredundant-decls -Wreturn-type -Wswitch-default -Wunused-value -Wimplicit -Wimplicit-function-declaration -Wimplicit-int -Wimport -Wunused -Wunused-function -Wunused-label -Wno-int-to-pointer-cast -Wbad-function-cast -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wold-style-definition -Wstrict-prototypes -Wdeclaration-after-st [...]
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+CFLAGS = -D_USE_PTHREADS -D__SIM_SSE3 -O2 -D_GNU_SOURCE -msse3 -fomit-frame-pointer -funroll-loops $(EXTRA_CFLAGS) #-Wall -pedantic -Wunused-parameter -Wredundant-decls -Wreturn-type -Wswitch-default -Wunused-value -Wimplicit -Wimplicit-function-declaration -Wimplicit-int -Wimport -Wunused -Wunused-function -Wunused-label -Wno-int-to-pointer-cast -Wbad-function-cast -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wold-style-definition -Wstrict-prototypes -Wdecl [...]
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- LIBRARIES = -lm -pthread
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-@@ -17,7 +17,7 @@
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- GLOBAL_DEPS = axml.h globalVariables.h
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- raxmlHPC : $(objs)
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-- $(CC) -o raxmlHPC-PTHREADS-SSE3 $(objs) $(LIBRARIES)
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+ $(CC) $(LDFLAGS) -o raxmlHPC-PTHREADS-SSE3 $(objs) $(LIBRARIES)
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- #rev_functions.o : rev_functions.c $(GLOBAL_DEPS)
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- classify.o : classify.c $(GLOBAL_DEPS)
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>---- Makefile.SSE3.gcc.orig 2011-04-07 06:42:34.000000000 +1000
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+++ Makefile.SSE3.gcc 2012-06-21 09:00:41.000000000 +1000
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-@@ -3,7 +3,7 @@
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- CC = gcc
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>--CFLAGS = -D__SIM_SSE3 -msse3 -D_GNU_SOURCE -O2 -fomit-frame-pointer -funroll-loops
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+CFLAGS = -D__SIM_SSE3 -msse3 -D_GNU_SOURCE -O2 -fomit-frame-pointer -funroll-loops $(EXTRA_CFLAGS)
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- LIBRARIES = -lm
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-@@ -16,7 +16,7 @@
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- GLOBAL_DEPS = axml.h globalVariables.h
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- raxmlHPC : $(objs)
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-- $(CC) -o raxmlHPC-SSE3 $(objs) $(LIBRARIES)
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+ $(CC) $(LDFLAGS) -o raxmlHPC-SSE3 $(objs) $(LIBRARIES)
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- classify.o : classify.c $(GLOBAL_DEPS)
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- evaluatePartialSpecialGeneric.o : evaluatePartialSpecialGeneric.c $(GLOBAL_DEPS)
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>---- Makefile.gcc.orig 2012-06-21 09:00:26.000000000 +1000
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+++ Makefile.gcc 2012-06-21 09:00:34.000000000 +1000
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-@@ -4,7 +4,7 @@
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- CC = gcc
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>--CFLAGS = -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -msse
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+CFLAGS = -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -msse $(EXTRA_CFLAGS)
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- #-Wall -pedantic -Wunused-parameter -Wredundant-decls -Wreturn-type -Wswitch-default -Wunused-value -Wimplicit -Wimplicit-function-declaration -Wimplicit-int -Wimport -Wunused -Wunused-function -Wunused-label -Wno-int-to-pointer-cast -Wbad-function-cast -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wold-style-definition -Wstrict-prototypes -Wdeclaration-after-statement -Wpointer-sign -Wextra -Wredundant-decls -Wunused -Wunused-function -Wunused-parameter -Wunu [...]
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- LIBRARIES = -lm
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-@@ -18,7 +18,7 @@
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- GLOBAL_DEPS = axml.h globalVariables.h
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- raxmlHPC : $(objs)
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-- $(CC) -o raxmlHPC $(objs) $(LIBRARIES)
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+ $(CC) $(LDFLAGS) -o raxmlHPC $(objs) $(LIBRARIES)
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- classify.o : classify.c $(GLOBAL_DEPS)
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- evaluatePartialSpecialGeneric.o : evaluatePartialSpecialGeneric.c $(GLOBAL_DEPS)
</span><span style='display:block; white-space:pre;color:#808080;'>diff --git a/science/raxml/files/patch-Makefiles.diff b/science/raxml/files/patch-Makefiles.diff
</span>new file mode 100644
<span style='display:block; white-space:pre;color:#808080;'>index 0000000..8f484a2
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>--- /dev/null
</span><span style='display:block; white-space:pre;background:#e0e0ff;'>+++ b/science/raxml/files/patch-Makefiles.diff
</span><span style='display:block; white-space:pre;background:#e0e0e0;'>@@ -0,0 +1,380 @@
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+--- Makefile.AVX.PTHREADS.mac.orig 2013-08-29 06:56:26.000000000 -0700
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>++++ Makefile.AVX.PTHREADS.mac 2020-05-17 08:10:17.000000000 -0700
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+@@ -3,7 +3,7 @@
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ CC = clang
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+-CFLAGS = -D_USE_PTHREADS -D__SIM_SSE3 -O2 -D_GNU_SOURCE -msse3 -fomit-frame-pointer -funroll-loops -D__AVX #-Wall -pedantic -Wunused-parameter -Wredundant-decls -Wreturn-type -Wswitch-default -Wunused-value -Wimplicit -Wimplicit-function-declaration -Wimplicit-int -Wimport -Wunused -Wunused-function -Wunused-label -Wno-int-to-pointer-cast -Wbad-function-cast -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wold-style-definition -Wstrict-prototypes -Wdeclaration- [...]
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>++CFLAGS += -D_USE_PTHREADS -D__SIM_SSE3 -D_GNU_SOURCE -msse3 -fomit-frame-pointer -funroll-loops -D__AVX #-Wall -pedantic -Wunused-parameter -Wredundant-decls -Wreturn-type -Wswitch-default -Wunused-value -Wimplicit -Wimplicit-function-declaration -Wimplicit-int -Wimport -Wunused -Wunused-function -Wunused-label -Wno-int-to-pointer-cast -Wbad-function-cast -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wold-style-definition -Wstrict-prototypes -Wdeclaration-aft [...]
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ LIBRARIES = -lm -pthread
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+@@ -17,7 +17,7 @@
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ GLOBAL_DEPS = axml.h globalVariables.h #mem_alloc.h compiler.h gcc.h ll_asm.h ll_list.h
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ raxmlHPC : $(objs)
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+- $(CC) -o raxmlHPC-PTHREADS-AVX $(objs) $(LIBRARIES)
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>++ $(CC) -o raxmlHPC-PTHREADS-AVX $(objs) $(LIBRARIES) $(LDFLAGS)
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ avxLikelihood.o : avxLikelihood.c $(GLOBAL_DEPS)
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ $(CC) $(CFLAGS) -mavx -c -o avxLikelihood.o avxLikelihood.c
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+--- Makefile.AVX.HYBRID.gcc.orig 2013-08-29 06:56:26.000000000 -0700
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>++++ Makefile.AVX.HYBRID.gcc 2020-05-17 08:10:18.000000000 -0700
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+@@ -2,7 +2,7 @@
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ CC = mpicc
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+-CFLAGS = -D_WAYNE_MPI -D_USE_PTHREADS -D__SIM_SSE3 -O2 -D_GNU_SOURCE -msse3 -fomit-frame-pointer -funroll-loops -D__AVX
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>++CFLAGS += -D_WAYNE_MPI -D_USE_PTHREADS -D__SIM_SSE3 -D_GNU_SOURCE -msse3 -fomit-frame-pointer -funroll-loops -D__AVX
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ LIBRARIES = -lm -pthread
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+@@ -15,7 +15,7 @@
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ GLOBAL_DEPS = axml.h globalVariables.h #mem_alloc.h compiler.h gcc.h ll_asm.h ll_list.h
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ raxmlHPC-HYBRID-AVX : $(objs)
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+- $(CC) -o raxmlHPC-HYBRID-AVX $(objs) $(LIBRARIES)
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>++ $(CC) -o raxmlHPC-HYBRID-AVX $(objs) $(LIBRARIES) $(LDFLAGS)
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ avxLikelihood.o : avxLikelihood.c $(GLOBAL_DEPS)
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ $(CC) $(CFLAGS) -mavx -c -o avxLikelihood.o avxLikelihood.c
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+--- Makefile.SSE3.HYBRID.gcc.orig 2013-08-29 06:56:26.000000000 -0700
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>++++ Makefile.SSE3.HYBRID.gcc 2020-05-17 08:10:18.000000000 -0700
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+@@ -2,7 +2,7 @@
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ CC = mpicc
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+-CFLAGS = -D_WAYNE_MPI -D_USE_PTHREADS -D__SIM_SSE3 -O2 -D_GNU_SOURCE -msse3 -fomit-frame-pointer -funroll-loops
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>++CFLAGS += -D_WAYNE_MPI -D_USE_PTHREADS -D__SIM_SSE3 -D_GNU_SOURCE -msse3 -fomit-frame-pointer -funroll-loops
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ LIBRARIES = -lm -pthread
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+@@ -15,7 +15,7 @@
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ GLOBAL_DEPS = axml.h globalVariables.h #mem_alloc.h compiler.h gcc.h ll_asm.h ll_list.h
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ raxmlHPC-HYBRID-SSE3 : $(objs)
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+- $(CC) -o raxmlHPC-HYBRID-SSE3 $(objs) $(LIBRARIES)
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>++ $(CC) -o raxmlHPC-HYBRID-SSE3 $(objs) $(LIBRARIES) $(LDFLAGS)
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ classify.o : classify.c $(GLOBAL_DEPS)
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ evaluatePartialSpecialGeneric.o : evaluatePartialSpecialGeneric.c $(GLOBAL_DEPS)
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+--- Makefile.AVX.MPI.gcc.orig 2013-08-29 06:56:26.000000000 -0700
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>++++ Makefile.AVX.MPI.gcc 2020-05-17 08:10:18.000000000 -0700
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+@@ -2,7 +2,7 @@
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ CC = mpicc
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+-CFLAGS = -D_WAYNE_MPI -D__SIM_SSE3 -O2 -D_GNU_SOURCE -msse3 -fomit-frame-pointer -funroll-loops -D__AVX
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>++CFLAGS += -D_WAYNE_MPI -D__SIM_SSE3 -D_GNU_SOURCE -msse3 -fomit-frame-pointer -funroll-loops -D__AVX
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ LIBRARIES = -lm
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+@@ -15,7 +15,7 @@
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ GLOBAL_DEPS = axml.h globalVariables.h #mem_alloc.h
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ raxmlHPC-MPI-AVX : $(objs)
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+- $(CC) -o raxmlHPC-MPI-AVX $(objs) $(LIBRARIES)
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>++ $(CC) -o raxmlHPC-MPI-AVX $(objs) $(LIBRARIES) $(LDFLAGS)
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ avxLikelihood.o : avxLikelihood.c $(GLOBAL_DEPS)
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ $(CC) $(CFLAGS) -mavx -c -o avxLikelihood.o avxLikelihood.c
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+--- Makefile.SSE3.MPI.gcc.orig 2013-08-29 06:56:26.000000000 -0700
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>++++ Makefile.SSE3.MPI.gcc 2020-05-17 08:10:18.000000000 -0700
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+@@ -2,7 +2,7 @@
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ CC = mpicc
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+-CFLAGS = -D_WAYNE_MPI -D__SIM_SSE3 -O2 -D_GNU_SOURCE -msse3 -fomit-frame-pointer -funroll-loops
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>++CFLAGS += -D_WAYNE_MPI -D__SIM_SSE3 -D_GNU_SOURCE -msse3 -fomit-frame-pointer -funroll-loops
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ LIBRARIES = -lm
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+@@ -15,7 +15,7 @@
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ GLOBAL_DEPS = axml.h globalVariables.h #mem_alloc.h
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ raxmlHPC-MPI-SSE3 : $(objs)
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+- $(CC) -o raxmlHPC-MPI-SSE3 $(objs) $(LIBRARIES)
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>++ $(CC) -o raxmlHPC-MPI-SSE3 $(objs) $(LIBRARIES) $(LDFLAGS)
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ classify.o : classify.c $(GLOBAL_DEPS)
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ evaluatePartialSpecialGeneric.o : evaluatePartialSpecialGeneric.c $(GLOBAL_DEPS)
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+--- Makefile.SSE3.gcc.orig 2013-08-29 06:56:26.000000000 -0700
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>++++ Makefile.SSE3.gcc 2020-05-17 08:10:18.000000000 -0700
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+@@ -3,7 +3,7 @@
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ CC = gcc
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+-CFLAGS = -D__SIM_SSE3 -msse3 -D_GNU_SOURCE -O2 -fomit-frame-pointer -funroll-loops #-Wall -pedantic -Wunused-parameter -Wredundant-decls -Wreturn-type -Wswitch-default -Wunused-value -Wimplicit -Wimplicit-function-declaration -Wimplicit-int -Wimport -Wunused -Wunused-function -Wunused-label -Wno-int-to-pointer-cast -Wbad-function-cast -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wold-style-definition -Wstrict-prototypes -Wdeclaration-after-statement -Wpoint [...]
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>++CFLAGS += -D__SIM_SSE3 -msse3 -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops #-Wall -pedantic -Wunused-parameter -Wredundant-decls -Wreturn-type -Wswitch-default -Wunused-value -Wimplicit -Wimplicit-function-declaration -Wimplicit-int -Wimport -Wunused -Wunused-function -Wunused-label -Wno-int-to-pointer-cast -Wbad-function-cast -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wold-style-definition -Wstrict-prototypes -Wdeclaration-after-statement -Wpointer- [...]
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ LIBRARIES = -lm
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+@@ -16,7 +16,7 @@
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ GLOBAL_DEPS = axml.h globalVariables.h
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ raxmlHPC : $(objs)
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+- $(CC) -o raxmlHPC-SSE3 $(objs) $(LIBRARIES)
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>++ $(CC) -o raxmlHPC-SSE3 $(objs) $(LIBRARIES) $(LDFLAGS)
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ classify.o : classify.c $(GLOBAL_DEPS)
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ evaluatePartialSpecialGeneric.o : evaluatePartialSpecialGeneric.c $(GLOBAL_DEPS)
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+--- Makefile.HYBRID.gcc.orig 2013-08-29 06:56:26.000000000 -0700
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>++++ Makefile.HYBRID.gcc 2020-05-17 08:10:18.000000000 -0700
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+@@ -3,7 +3,7 @@
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ CC = mpicc
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+-CFLAGS = -D_WAYNE_MPI -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -D_USE_PTHREADS -msse
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>++CFLAGS += -D_WAYNE_MPI -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D_USE_PTHREADS -msse
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ LIBRARIES = -lm -pthread
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+@@ -17,7 +17,7 @@
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ GLOBAL_DEPS = axml.h globalVariables.h #mem_alloc.h compiler.h gcc.h ll_asm.h ll_list.h
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ raxmlHPC-HYBRID : $(objs)
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+- $(CC) -o raxmlHPC-HYBRID $(objs) $(LIBRARIES)
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>++ $(CC) -o raxmlHPC-HYBRID $(objs) $(LIBRARIES) $(LDFLAGS)
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ classify.o : classify.c $(GLOBAL_DEPS)
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ evaluatePartialSpecialGeneric.o : evaluatePartialSpecialGeneric.c $(GLOBAL_DEPS)
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+--- Makefile.SSE3.QuartetMPI.gcc.orig 2013-08-29 06:56:26.000000000 -0700
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>++++ Makefile.SSE3.QuartetMPI.gcc 2020-05-17 08:10:18.000000000 -0700
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+@@ -3,7 +3,7 @@
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ CC = mpicc
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+-CFLAGS = -D__SIM_SSE3 -msse3 -D_GNU_SOURCE -O2 -fomit-frame-pointer -funroll-loops -D_QUARTET_MPI #-Wall -pedantic -Wunused-parameter -Wredundant-decls -Wreturn-type -Wswitch-default -Wunused-value -Wimplicit -Wimplicit-function-declaration -Wimplicit-int -Wimport -Wunused -Wunused-function -Wunused-label -Wno-int-to-pointer-cast -Wbad-function-cast -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wold-style-definition -Wstrict-prototypes -Wdeclaration-after-st [...]
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>++CFLAGS += -D__SIM_SSE3 -msse3 -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D_QUARTET_MPI #-Wall -pedantic -Wunused-parameter -Wredundant-decls -Wreturn-type -Wswitch-default -Wunused-value -Wimplicit -Wimplicit-function-declaration -Wimplicit-int -Wimport -Wunused -Wunused-function -Wunused-label -Wno-int-to-pointer-cast -Wbad-function-cast -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wold-style-definition -Wstrict-prototypes -Wdeclaration-after-state [...]
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ LIBRARIES = -lm
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+@@ -16,7 +16,7 @@
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ GLOBAL_DEPS = axml.h globalVariables.h #mem_alloc.h
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ raxmlHPC : $(objs)
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+- $(CC) -o raxmlHPC-SSE3-QUARTET-MPI $(objs) $(LIBRARIES)
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>++ $(CC) -o raxmlHPC-SSE3-QUARTET-MPI $(objs) $(LIBRARIES) $(LDFLAGS)
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ classify.o : classify.c $(GLOBAL_DEPS)
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ evaluatePartialSpecialGeneric.o : evaluatePartialSpecialGeneric.c $(GLOBAL_DEPS)
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+--- Makefile.AVX.gcc.orig 2013-08-29 06:56:26.000000000 -0700
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>++++ Makefile.AVX.gcc 2020-05-17 08:10:18.000000000 -0700
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+@@ -3,7 +3,7 @@
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ CC = gcc
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+-CFLAGS = -D__SIM_SSE3 -msse3 -D_GNU_SOURCE -O2 -fomit-frame-pointer -funroll-loops -D__AVX #-Wall -Wunused-parameter -Wredundant-decls -Wreturn-type -Wswitch-default -Wunused-value -Wimplicit -Wimplicit-function-declaration -Wimplicit-int -Wimport -Wunused -Wunused-function -Wunused-label -Wno-int-to-pointer-cast -Wbad-function-cast -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wold-style-definition -Wstrict-prototypes -Wpointer-sign -Wextra -Wredundant-decls - [...]
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>++CFLAGS += -D__SIM_SSE3 -msse3 -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D__AVX #-Wall -Wunused-parameter -Wredundant-decls -Wreturn-type -Wswitch-default -Wunused-value -Wimplicit -Wimplicit-function-declaration -Wimplicit-int -Wimport -Wunused -Wunused-function -Wunused-label -Wno-int-to-pointer-cast -Wbad-function-cast -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wold-style-definition -Wstrict-prototypes -Wpointer-sign -Wextra -Wredundant-decls -Wun [...]
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ LIBRARIES = -lm
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+@@ -16,7 +16,7 @@
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ GLOBAL_DEPS = axml.h globalVariables.h
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ raxmlHPC : $(objs)
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+- $(CC) -o raxmlHPC-AVX $(objs) $(LIBRARIES)
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>++ $(CC) -o raxmlHPC-AVX $(objs) $(LIBRARIES) $(LDFLAGS)
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ avxLikelihood.o : avxLikelihood.c $(GLOBAL_DEPS)
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ $(CC) $(CFLAGS) -mavx -c -o avxLikelihood.o avxLikelihood.c
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+--- Makefile.PTHREADS.mac.orig 2013-08-29 06:56:26.000000000 -0700
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>++++ Makefile.PTHREADS.mac 2020-05-17 08:10:18.000000000 -0700
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+@@ -4,7 +4,7 @@
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ CC = gcc
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+-CFLAGS = -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -D_USE_PTHREADS -msse #-Wall -Wunused-parameter -Wredundant-decls -Wreturn-type -Wswitch-default -Wunused-value -Wimplicit -Wimplicit-function-declaration -Wimplicit-int -Wimport -Wunused -Wunused-function -Wunused-label -Wno-int-to-pointer-cast -Wbad-function-cast -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wold-style-definition -Wstrict-prototypes -Wpointer-sign -Wextra -Wredundant-decls -Wun [...]
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>++CFLAGS += -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D_USE_PTHREADS -msse #-Wall -Wunused-parameter -Wredundant-decls -Wreturn-type -Wswitch-default -Wunused-value -Wimplicit -Wimplicit-function-declaration -Wimplicit-int -Wimport -Wunused -Wunused-function -Wunused-label -Wno-int-to-pointer-cast -Wbad-function-cast -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wold-style-definition -Wstrict-prototypes -Wpointer-sign -Wextra -Wredundant-decls -Wunuse [...]
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ LIBRARIES = -lm -pthread
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+@@ -18,7 +18,7 @@
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ GLOBAL_DEPS = axml.h globalVariables.h #mem_alloc.h compiler.h gcc.h ll_asm.h ll_list.h
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ raxmlHPC-PTHREADS : $(objs)
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+- $(CC) -o raxmlHPC-PTHREADS $(objs) $(LIBRARIES)
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>++ $(CC) -o raxmlHPC-PTHREADS $(objs) $(LIBRARIES) $(LDFLAGS)
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ classify.o : classify.c $(GLOBAL_DEPS)
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ evaluatePartialSpecialGeneric.o : evaluatePartialSpecialGeneric.c $(GLOBAL_DEPS)
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+--- Makefile.SSE3.PTHREADS.gcc.orig 2013-08-29 06:56:26.000000000 -0700
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>++++ Makefile.SSE3.PTHREADS.gcc 2020-05-17 08:10:19.000000000 -0700
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+@@ -3,7 +3,7 @@
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ CC = gcc
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+-CFLAGS = -D_USE_PTHREADS -D__SIM_SSE3 -O2 -D_GNU_SOURCE -msse3 -fomit-frame-pointer -funroll-loops #-Wall -pedantic -Wunused-parameter -Wredundant-decls -Wreturn-type -Wswitch-default -Wunused-value -Wimplicit -Wimplicit-function-declaration -Wimplicit-int -Wimport -Wunused -Wunused-function -Wunused-label -Wno-int-to-pointer-cast -Wbad-function-cast -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wold-style-definition -Wstrict-prototypes -Wdeclaration-after-st [...]
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>++CFLAGS += -D_USE_PTHREADS -D__SIM_SSE3 -D_GNU_SOURCE -msse3 -fomit-frame-pointer -funroll-loops #-Wall -pedantic -Wunused-parameter -Wredundant-decls -Wreturn-type -Wswitch-default -Wunused-value -Wimplicit -Wimplicit-function-declaration -Wimplicit-int -Wimport -Wunused -Wunused-function -Wunused-label -Wno-int-to-pointer-cast -Wbad-function-cast -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wold-style-definition -Wstrict-prototypes -Wdeclaration-after-state [...]
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ LIBRARIES = -lm -pthread
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+@@ -17,7 +17,7 @@
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ GLOBAL_DEPS = axml.h globalVariables.h #mem_alloc.h compiler.h gcc.h ll_asm.h ll_list.h
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ raxmlHPC : $(objs)
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+- $(CC) -o raxmlHPC-PTHREADS-SSE3 $(objs) $(LIBRARIES)
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>++ $(CC) -o raxmlHPC-PTHREADS-SSE3 $(objs) $(LIBRARIES) $(LDFLAGS)
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ #rev_functions.o : rev_functions.c $(GLOBAL_DEPS)
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ classify.o : classify.c $(GLOBAL_DEPS)
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+--- Makefile.SSE3.PTHREADS.mac.orig 2013-08-29 06:56:26.000000000 -0700
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>++++ Makefile.SSE3.PTHREADS.mac 2020-05-17 08:10:19.000000000 -0700
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+@@ -3,7 +3,7 @@
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ CC = gcc
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+-CFLAGS = -D_USE_PTHREADS -D__SIM_SSE3 -O2 -D_GNU_SOURCE -msse3 -fomit-frame-pointer -funroll-loops #-Wall -pedantic -Wunused-parameter -Wredundant-decls -Wreturn-type -Wswitch-default -Wunused-value -Wimplicit -Wimplicit-function-declaration -Wimplicit-int -Wimport -Wunused -Wunused-function -Wunused-label -Wno-int-to-pointer-cast -Wbad-function-cast -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wold-style-definition -Wstrict-prototypes -Wdeclaration-after-st [...]
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>++CFLAGS += -D_USE_PTHREADS -D__SIM_SSE3 -D_GNU_SOURCE -msse3 -fomit-frame-pointer -funroll-loops #-Wall -pedantic -Wunused-parameter -Wredundant-decls -Wreturn-type -Wswitch-default -Wunused-value -Wimplicit -Wimplicit-function-declaration -Wimplicit-int -Wimport -Wunused -Wunused-function -Wunused-label -Wno-int-to-pointer-cast -Wbad-function-cast -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wold-style-definition -Wstrict-prototypes -Wdeclaration-after-state [...]
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ LIBRARIES = -lm -pthread
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+@@ -17,7 +17,7 @@
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ GLOBAL_DEPS = axml.h globalVariables.h #mem_alloc.h compiler.h gcc.h ll_asm.h ll_list.h
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ raxmlHPC : $(objs)
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+- $(CC) -o raxmlHPC-PTHREADS-SSE3 $(objs) $(LIBRARIES)
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>++ $(CC) -o raxmlHPC-PTHREADS-SSE3 $(objs) $(LIBRARIES) $(LDFLAGS)
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ #rev_functions.o : rev_functions.c $(GLOBAL_DEPS)
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ classify.o : classify.c $(GLOBAL_DEPS)
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+--- Makefile.AVX.mac.orig 2013-08-29 06:56:26.000000000 -0700
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>++++ Makefile.AVX.mac 2020-05-17 08:10:19.000000000 -0700
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+@@ -3,7 +3,7 @@
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ CC = clang
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+-CFLAGS = -D__SIM_SSE3 -msse3 -D_GNU_SOURCE -O2 -fomit-frame-pointer -funroll-loops -D__AVX #-Wall -pedantic -Wunused-parameter -Wredundant-decls -Wreturn-type -Wswitch-default -Wunused-value -Wimplicit -Wimplicit-function-declaration -Wimplicit-int -Wimport -Wunused -Wunused-function -Wunused-label -Wno-int-to-pointer-cast -Wbad-function-cast -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wold-style-definition -Wstrict-prototypes -Wdeclaration-after-statement - [...]
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>++CFLAGS += -D__SIM_SSE3 -msse3 -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D__AVX #-Wall -pedantic -Wunused-parameter -Wredundant-decls -Wreturn-type -Wswitch-default -Wunused-value -Wimplicit -Wimplicit-function-declaration -Wimplicit-int -Wimport -Wunused -Wunused-function -Wunused-label -Wno-int-to-pointer-cast -Wbad-function-cast -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wold-style-definition -Wstrict-prototypes -Wdeclaration-after-statement -Wpo [...]
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ LIBRARIES = -lm
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+@@ -16,7 +16,7 @@
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ GLOBAL_DEPS = axml.h globalVariables.h #mem_alloc.h
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ raxmlHPC : $(objs)
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+- $(CC) -o raxmlHPC-AVX $(objs) $(LIBRARIES)
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>++ $(CC) -o raxmlHPC-AVX $(objs) $(LIBRARIES) $(LDFLAGS)
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ avxLikelihood.o : avxLikelihood.c $(GLOBAL_DEPS)
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ $(CC) $(CFLAGS) -mavx -c -o avxLikelihood.o avxLikelihood.c
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+--- Makefile.PTHREADS.gcc.orig 2013-08-29 06:56:26.000000000 -0700
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>++++ Makefile.PTHREADS.gcc 2020-05-17 08:10:19.000000000 -0700
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+@@ -4,7 +4,7 @@
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ CC = gcc
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+-CFLAGS = -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -D_USE_PTHREADS -msse #-Wall -Wunused-parameter -Wredundant-decls -Wreturn-type -Wswitch-default -Wunused-value -Wimplicit -Wimplicit-function-declaration -Wimplicit-int -Wimport -Wunused -Wunused-function -Wunused-label -Wno-int-to-pointer-cast -Wbad-function-cast -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wold-style-definition -Wstrict-prototypes -Wpointer-sign -Wextra -Wredundant-decls -Wunu [...]
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>++CFLAGS += -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D_USE_PTHREADS -msse #-Wall -Wunused-parameter -Wredundant-decls -Wreturn-type -Wswitch-default -Wunused-value -Wimplicit -Wimplicit-function-declaration -Wimplicit-int -Wimport -Wunused -Wunused-function -Wunused-label -Wno-int-to-pointer-cast -Wbad-function-cast -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wold-style-definition -Wstrict-prototypes -Wpointer-sign -Wextra -Wredundant-decls -Wunused [...]
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ LIBRARIES = -lm -pthread
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+@@ -18,7 +18,7 @@
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ GLOBAL_DEPS = axml.h globalVariables.h #mem_alloc.h compiler.h gcc.h ll_asm.h ll_list.h
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ raxmlHPC-PTHREADS : $(objs)
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+- $(CC) -o raxmlHPC-PTHREADS $(objs) $(LIBRARIES)
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>++ $(CC) -o raxmlHPC-PTHREADS $(objs) $(LIBRARIES) $(LDFLAGS)
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ classify.o : classify.c $(GLOBAL_DEPS)
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ evaluatePartialSpecialGeneric.o : evaluatePartialSpecialGeneric.c $(GLOBAL_DEPS)
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+--- Makefile.gcc.orig 2013-08-29 06:56:26.000000000 -0700
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>++++ Makefile.gcc 2020-05-17 08:10:19.000000000 -0700
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+@@ -4,7 +4,7 @@
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ CC = gcc
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+-CFLAGS = -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -msse #-Wall -Wunused-parameter -Wredundant-decls -Wreturn-type -Wswitch-default -Wunused-value -Wimplicit -Wimplicit-function-declaration -Wimplicit-int -Wimport -Wunused -Wunused-function -Wunused-label -Wno-int-to-pointer-cast -Wbad-function-cast -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wold-style-definition -Wstrict-prototypes -Wpointer-sign -Wextra -Wredundant-decls -Wunused -Wunused-funct [...]
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>++CFLAGS += -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -msse #-Wall -Wunused-parameter -Wredundant-decls -Wreturn-type -Wswitch-default -Wunused-value -Wimplicit -Wimplicit-function-declaration -Wimplicit-int -Wimport -Wunused -Wunused-function -Wunused-label -Wno-int-to-pointer-cast -Wbad-function-cast -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wold-style-definition -Wstrict-prototypes -Wpointer-sign -Wextra -Wredundant-decls -Wunused -Wunused-function [...]
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ LIBRARIES = -lm
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+@@ -17,7 +17,7 @@
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ GLOBAL_DEPS = axml.h globalVariables.h #mem_alloc.h
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ raxmlHPC : $(objs)
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+- $(CC) -o raxmlHPC $(objs) $(LIBRARIES)
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>++ $(CC) -o raxmlHPC $(objs) $(LIBRARIES) $(LDFLAGS)
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ classify.o : classify.c $(GLOBAL_DEPS)
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ evaluatePartialSpecialGeneric.o : evaluatePartialSpecialGeneric.c $(GLOBAL_DEPS)
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+--- Makefile.SSE3.mac.orig 2013-08-29 06:56:26.000000000 -0700
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>++++ Makefile.SSE3.mac 2020-05-17 08:10:19.000000000 -0700
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+@@ -3,7 +3,7 @@
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ CC = clang
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+-CFLAGS = -D__SIM_SSE3 -msse3 -D_GNU_SOURCE -O2 -fomit-frame-pointer -funroll-loops #-Wall -pedantic -Wunused-parameter -Wredundant-decls -Wreturn-type -Wswitch-default -Wunused-value -Wimplicit -Wimplicit-function-declaration -Wimplicit-int -Wimport -Wunused -Wunused-function -Wunused-label -Wno-int-to-pointer-cast -Wbad-function-cast -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wold-style-definition -Wstrict-prototypes -Wdeclaration-after-statement -Wpoint [...]
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>++CFLAGS += -D__SIM_SSE3 -msse3 -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops #-Wall -pedantic -Wunused-parameter -Wredundant-decls -Wreturn-type -Wswitch-default -Wunused-value -Wimplicit -Wimplicit-function-declaration -Wimplicit-int -Wimport -Wunused -Wunused-function -Wunused-label -Wno-int-to-pointer-cast -Wbad-function-cast -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wold-style-definition -Wstrict-prototypes -Wdeclaration-after-statement -Wpointer- [...]
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ LIBRARIES = -lm
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+@@ -16,7 +16,7 @@
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ GLOBAL_DEPS = axml.h globalVariables.h #mem_alloc.h
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ raxmlHPC : $(objs)
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+- $(CC) -o raxmlHPC-SSE3 $(objs) $(LIBRARIES)
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>++ $(CC) -o raxmlHPC-SSE3 $(objs) $(LIBRARIES) $(LDFLAGS)
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ classify.o : classify.c $(GLOBAL_DEPS)
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ evaluatePartialSpecialGeneric.o : evaluatePartialSpecialGeneric.c $(GLOBAL_DEPS)
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+--- Makefile.MPI.gcc.orig 2013-08-29 06:56:26.000000000 -0700
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>++++ Makefile.MPI.gcc 2020-05-17 08:10:19.000000000 -0700
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+@@ -3,7 +3,7 @@
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ CC = mpicc
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+-CFLAGS = -D_WAYNE_MPI -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -msse
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>++CFLAGS += -D_WAYNE_MPI -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -msse
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ LIBRARIES = -lm
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+@@ -17,7 +17,7 @@
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ GLOBAL_DEPS = axml.h globalVariables.h #mem_alloc.h
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ raxmlHPC-MPI : $(objs)
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+- $(CC) -o raxmlHPC-MPI $(objs) $(LIBRARIES)
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>++ $(CC) -o raxmlHPC-MPI $(objs) $(LIBRARIES) $(LDFLAGS)
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ classify.o : classify.c $(GLOBAL_DEPS)
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ evaluatePartialSpecialGeneric.o : evaluatePartialSpecialGeneric.c $(GLOBAL_DEPS)
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+--- Makefile.AVX.PTHREADS.gcc.orig 2013-08-29 06:56:26.000000000 -0700
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>++++ Makefile.AVX.PTHREADS.gcc 2020-05-17 08:10:19.000000000 -0700
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+@@ -3,7 +3,7 @@
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ CC = gcc
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+-CFLAGS = -D_USE_PTHREADS -D__SIM_SSE3 -O2 -D_GNU_SOURCE -msse3 -fomit-frame-pointer -funroll-loops -D__AVX #-Wall -pedantic -Wunused-parameter -Wredundant-decls -Wreturn-type -Wswitch-default -Wunused-value -Wimplicit -Wimplicit-function-declaration -Wimplicit-int -Wimport -Wunused -Wunused-function -Wunused-label -Wno-int-to-pointer-cast -Wbad-function-cast -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wold-style-definition -Wstrict-prototypes -Wdeclaration [...]
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>++CFLAGS += -D_USE_PTHREADS -D__SIM_SSE3 -D_GNU_SOURCE -msse3 -fomit-frame-pointer -funroll-loops -D__AVX #-Wall -pedantic -Wunused-parameter -Wredundant-decls -Wreturn-type -Wswitch-default -Wunused-value -Wimplicit -Wimplicit-function-declaration -Wimplicit-int -Wimport -Wunused -Wunused-function -Wunused-label -Wno-int-to-pointer-cast -Wbad-function-cast -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wold-style-definition -Wstrict-prototypes -Wdeclaration-af [...]
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ LIBRARIES = -lm -pthread
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+@@ -17,7 +17,7 @@
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ GLOBAL_DEPS = axml.h globalVariables.h #mem_alloc.h compiler.h gcc.h ll_asm.h ll_list.h
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ raxmlHPC : $(objs)
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+- $(CC) -o raxmlHPC-PTHREADS-AVX $(objs) $(LIBRARIES)
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>++ $(CC) -o raxmlHPC-PTHREADS-AVX $(objs) $(LIBRARIES) $(LDFLAGS)
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ avxLikelihood.o : avxLikelihood.c $(GLOBAL_DEPS)
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ $(CC) $(CFLAGS) -mavx -c -o avxLikelihood.o avxLikelihood.c
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+--- Makefile.QuartetMPI.gcc.orig 2013-08-29 06:56:26.000000000 -0700
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>++++ Makefile.QuartetMPI.gcc 2020-05-17 08:10:19.000000000 -0700
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+@@ -4,7 +4,7 @@
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ CC = mpicc
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+-CFLAGS = -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -msse -D_QUARTET_MPI #-Wall -pedantic -Wunused-parameter -Wredundant-decls -Wreturn-type -Wswitch-default -Wunused-value -Wimplicit -Wimplicit-function-declaration -Wimplicit-int -Wimport -Wunused -Wunused-function -Wunused-label -Wno-int-to-pointer-cast -Wbad-function-cast -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wold-style-definition -Wstrict-prototypes -Wdeclaration-after-statement -Wpointe [...]
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>++CFLAGS += -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -msse -D_QUARTET_MPI #-Wall -pedantic -Wunused-parameter -Wredundant-decls -Wreturn-type -Wswitch-default -Wunused-value -Wimplicit -Wimplicit-function-declaration -Wimplicit-int -Wimport -Wunused -Wunused-function -Wunused-label -Wno-int-to-pointer-cast -Wbad-function-cast -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wold-style-definition -Wstrict-prototypes -Wdeclaration-after-statement -Wpointer-s [...]
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ LIBRARIES = -lm
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+@@ -17,7 +17,7 @@
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ GLOBAL_DEPS = axml.h globalVariables.h #mem_alloc.h
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ raxmlHPC : $(objs)
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+- $(CC) -o raxmlHPC-QUARTET-MPI $(objs) $(LIBRARIES)
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>++ $(CC) -o raxmlHPC-QUARTET-MPI $(objs) $(LIBRARIES) $(LDFLAGS)
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ classify.o : classify.c $(GLOBAL_DEPS)
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ evaluatePartialSpecialGeneric.o : evaluatePartialSpecialGeneric.c $(GLOBAL_DEPS)
</span></pre><pre style='margin:0'>
</pre>