<pre style='margin:0'>
Renee Otten (reneeotten) pushed a commit to branch master
in repository macports-ports.
</pre>
<p><a href="https://github.com/macports/macports-ports/commit/97ae5d816f800e429f56e63e75824f70b8ab5a1f">https://github.com/macports/macports-ports/commit/97ae5d816f800e429f56e63e75824f70b8ab5a1f</a></p>
<pre style="white-space: pre; background: #F8F8F8">The following commit(s) were added to refs/heads/master by this push:
<span style='display:block; white-space:pre;color:#404040;'> new 97ae5d816f8 iqtree: new port, version 1.6.12
</span>97ae5d816f8 is described below
<span style='display:block; white-space:pre;color:#808000;'>commit 97ae5d816f800e429f56e63e75824f70b8ab5a1f
</span>Author: Tony Tung <tonytung@merly.org>
AuthorDate: Thu May 14 13:56:06 2020 -0700
<span style='display:block; white-space:pre;color:#404040;'> iqtree: new port, version 1.6.12
</span>---
science/iqtree/Portfile | 47 ++++++++++++++++++++++++++
science/iqtree/files/patch-CMakeLists.txt.diff | 25 ++++++++++++++
2 files changed, 72 insertions(+)
<span style='display:block; white-space:pre;color:#808080;'>diff --git a/science/iqtree/Portfile b/science/iqtree/Portfile
</span>new file mode 100644
<span style='display:block; white-space:pre;color:#808080;'>index 00000000000..0d7fad6cf1d
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>--- /dev/null
</span><span style='display:block; white-space:pre;background:#e0e0ff;'>+++ b/science/iqtree/Portfile
</span><span style='display:block; white-space:pre;background:#e0e0e0;'>@@ -0,0 +1,47 @@
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+# -*- coding: utf-8; mode: tcl; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- vim:fenc=utf-8:ft=tcl:et:sw=4:ts=4:sts=4
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+PortSystem 1.0
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+PortGroup github 1.0
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+PortGroup cmake 1.1
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+github.setup Cibiv IQ-TREE 1.6.12 v
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+github.tarball_from archive
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+name iqtree
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+revision 0
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+categories science
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+platforms darwin
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+license GPL-2
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+maintainers nomaintainer
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+description Efficient phylogenomic software by maximum likelihood
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+long_description The IQ-TREE software was created as the successor of IQPNNI and \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ TREE-PUZZLE (thus the name IQ-TREE). IQ-TREE was motivated by the \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ rapid accumulation of phylogenomic data, leading to a need for \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ efficient phylogenomic software that can handle a large amount of \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ data and provide more complex models of sequence evolution. To this \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ end, IQ-TREE can utilize multicore computers and distributed parallel \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ computing to speed up the analysis. IQ-TREE automatically performs \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ checkpointing to resume an interrupted analysis.
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+homepage http://www.iqtree.org/
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+checksums rmd160 249414b567bc4f3d2a939d8f7e71cd72f653ed3c \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ sha256 9614092de7a157de82c9cc402b19cc8bfa0cb0ffc93b91817875c2b4bb46a284 \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ size 4864641
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+patchfiles-append patch-CMakeLists.txt.diff
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+depends_build-append port:eigen3 \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ port:libomp \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ port:zlib
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+compiler.cxx_standard 2011
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+compiler.cpath-append ${prefix}/include/libomp
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+post-destroot {
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ xinstall -d ${destroot}${prefix}/share/doc/${name}
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ foreach file {example.nex example.cf models.nex example.phy} {
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ move ${destroot}${prefix}/${file} ${destroot}${prefix}/share/doc/${name}
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ }
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+}
</span><span style='display:block; white-space:pre;color:#808080;'>diff --git a/science/iqtree/files/patch-CMakeLists.txt.diff b/science/iqtree/files/patch-CMakeLists.txt.diff
</span>new file mode 100644
<span style='display:block; white-space:pre;color:#808080;'>index 00000000000..531f7b4a04d
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>--- /dev/null
</span><span style='display:block; white-space:pre;background:#e0e0ff;'>+++ b/science/iqtree/files/patch-CMakeLists.txt.diff
</span><span style='display:block; white-space:pre;background:#e0e0e0;'>@@ -0,0 +1,25 @@
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+--- CMakeLists.txt.orig 2020-06-06 10:59:21.000000000 -0400
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>++++ CMakeLists.txt 2020-06-06 11:01:08.000000000 -0400
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+@@ -89,14 +89,14 @@
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ add_definitions(-DWIN32)
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ elseif (APPLE)
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ message("Target OS : Mac OS X")
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+- # to be compatible back to Mac OS X 10.7
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+- if (IQTREE_FLAGS MATCHES "oldmac")
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+- add_definitions("-mmacosx-version-min=10.5")
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+- set(CMAKE_EXE_LINKER_FLAGS "${CMAKE_EXE_LINKER_FLAGS} -mmacosx-version-min=10.5")
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+- else()
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+- add_definitions("-mmacosx-version-min=10.7")
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+- set(CMAKE_EXE_LINKER_FLAGS "${CMAKE_EXE_LINKER_FLAGS} -mmacosx-version-min=10.7")
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+- endif()
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>++ ## # to be compatible back to Mac OS X 10.7
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>++ ## if (IQTREE_FLAGS MATCHES "oldmac")
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>++ ## add_definitions("-mmacosx-version-min=10.5")
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>++ ## set(CMAKE_EXE_LINKER_FLAGS "${CMAKE_EXE_LINKER_FLAGS} -mmacosx-version-min=10.5")
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>++ ## else()
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>++ ## add_definitions("-mmacosx-version-min=10.7")
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>++ ## set(CMAKE_EXE_LINKER_FLAGS "${CMAKE_EXE_LINKER_FLAGS} -mmacosx-version-min=10.7")
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>++ ## endif()
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ SET(CMAKE_FIND_LIBRARY_SUFFIXES .a ${CMAKE_FIND_LIBRARY_SUFFIXES})
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ elseif (UNIX)
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ message("Target OS : Unix")
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</pre>