<pre style='margin:0'>
Ken (kencu) pushed a commit to branch master
in repository macports-ports.
</pre>
<p><a href="https://github.com/macports/macports-ports/commit/caec77d6dadfc3838fbf27279b23fde7e4e05ddf">https://github.com/macports/macports-ports/commit/caec77d6dadfc3838fbf27279b23fde7e4e05ddf</a></p>
<pre style="white-space: pre; background: #F8F8F8">The following commit(s) were added to refs/heads/master by this push:
<span style='display:block; white-space:pre;color:#404040;'> new caec77d6dad seqan-apps: replace old seqan-apps port by seqan2-apps
</span>caec77d6dad is described below
<span style='display:block; white-space:pre;color:#808000;'>commit caec77d6dadfc3838fbf27279b23fde7e4e05ddf
</span>Author: rrahn <rene.rahn@fu-berlin.de>
AuthorDate: Wed Oct 14 00:39:14 2020 +0200
<span style='display:block; white-space:pre;color:#404040;'> seqan-apps: replace old seqan-apps port by seqan2-apps
</span><span style='display:block; white-space:pre;color:#404040;'>
</span><span style='display:block; white-space:pre;color:#404040;'> With the current SeqAn version 3 we stopped maintaing all-in-one application packaging.
</span><span style='display:block; white-space:pre;color:#404040;'> Accordingly, the users cannot expect that there are updates to this package any more.
</span><span style='display:block; white-space:pre;color:#404040;'> To reflect the end of life-cylce for this port we decided to rename it to the respective seqan version 2.
</span>---
science/seqan-apps/Portfile | 35 +++++++---------------------
science/{seqan-apps => seqan2-apps}/Portfile | 3 +--
2 files changed, 10 insertions(+), 28 deletions(-)
<span style='display:block; white-space:pre;color:#808080;'>diff --git a/science/seqan-apps/Portfile b/science/seqan-apps/Portfile
</span><span style='display:block; white-space:pre;color:#808080;'>index 2f91564e074..117b290366a 100644
</span><span style='display:block; white-space:pre;background:#e0e0ff;'>--- a/science/seqan-apps/Portfile
</span><span style='display:block; white-space:pre;background:#e0e0ff;'>+++ b/science/seqan-apps/Portfile
</span><span style='display:block; white-space:pre;background:#e0e0e0;'>@@ -5,7 +5,9 @@ PortGroup cmake 1.1
</span>
name seqan-apps
version 2.4.0
<span style='display:block; white-space:pre;background:#ffe0e0;'>-revision 2
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+revision 3
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+replaced_by seqan2-apps
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span> categories science
platforms darwin
universal_variant no
<span style='display:block; white-space:pre;background:#e0e0e0;'>@@ -20,31 +22,12 @@ long_description SeqAn applications for the analysis of large sets of sequenc
</span>
homepage https://www.seqan.de/applications/
<span style='display:block; white-space:pre;background:#ffe0e0;'>-depends_lib-append port:boost \
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- port:bzip2 \
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- port:zlib
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-depends_run-append port:coinor-liblemon
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-master_sites http://packages.seqan.de/seqan-src
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-distfiles seqan-src-${version}${extract.suffix}
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-distname seqan-seqan-v${version}
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-checksums rmd160 c843f8c749e6f2d8ff5233f160d9683743dce7c2 \
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- sha256 d7084d17729214003e84818e0280a16f223c8f1c6a30eeef040c27e0c0047bd7 \
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- size 109626901
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-compiler.cxx_standard 2014
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-compiler.openmp_version 3.0
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-configure.args-append -DSEQAN_BUILD_SYSTEM=SEQAN_RELEASE_APPS
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+livecheck.type none
</span>
<span style='display:block; white-space:pre;background:#ffe0e0;'>-if {${os.platform} eq "darwin" && ${os.major} < 16} {
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- known_fail yes
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- pre-fetch {
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- ui_error "${name} ${version} requires macOS 10.12 or greater."
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- return -code error "Incompatible macOS version."
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- }
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+pre-configure {
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ ui_error "Please do not install this port since it has been replaced by 'seqan2-apps'.\
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ Note that the all-in-one application package is not supported any more in seqan3."
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ return -code error
</span> }
<span style='display:block; white-space:pre;background:#ffe0e0;'>-livecheck.url http://packages.seqan.de/
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-livecheck.regex seqan-src-(\[0-9.\]+)${extract.suffix}
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+distfiles
</span><span style='display:block; white-space:pre;color:#808080;'>diff --git a/science/seqan-apps/Portfile b/science/seqan2-apps/Portfile
</span>similarity index 96%
copy from science/seqan-apps/Portfile
copy to science/seqan2-apps/Portfile
<span style='display:block; white-space:pre;color:#808080;'>index 2f91564e074..299c9b80c4f 100644
</span><span style='display:block; white-space:pre;background:#e0e0ff;'>--- a/science/seqan-apps/Portfile
</span><span style='display:block; white-space:pre;background:#e0e0ff;'>+++ b/science/seqan2-apps/Portfile
</span><span style='display:block; white-space:pre;background:#e0e0e0;'>@@ -3,9 +3,8 @@
</span> PortSystem 1.0
PortGroup cmake 1.1
<span style='display:block; white-space:pre;background:#ffe0e0;'>-name seqan-apps
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+name seqan2-apps
</span> version 2.4.0
<span style='display:block; white-space:pre;background:#ffe0e0;'>-revision 2
</span> categories science
platforms darwin
universal_variant no
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