<pre style='margin:0'>
Chris Jones (cjones051073) pushed a commit to branch master
in repository macports-ports.
</pre>
<p><a href="https://github.com/macports/macports-ports/commit/7d80f0e13baf17a8626d7fcdce4729dc559bf61c">https://github.com/macports/macports-ports/commit/7d80f0e13baf17a8626d7fcdce4729dc559bf61c</a></p>
<pre style="white-space: pre; background: #F8F8F8">The following commit(s) were added to refs/heads/master by this push:
<span style='display:block; white-space:pre;color:#404040;'> new 7d80f0e13ba bedtools: Update to 2.30.0
</span>7d80f0e13ba is described below
<span style='display:block; white-space:pre;color:#808000;'>commit 7d80f0e13baf17a8626d7fcdce4729dc559bf61c
</span>Author: Vadim-Valdis Yudaev <judaew@outlook.de>
AuthorDate: Tue Apr 20 04:10:10 2021 +0300
<span style='display:block; white-space:pre;color:#404040;'> bedtools: Update to 2.30.0
</span><span style='display:block; white-space:pre;color:#404040;'>
</span><span style='display:block; white-space:pre;color:#404040;'> Changes:
</span><span style='display:block; white-space:pre;color:#404040;'> * Update to 2.30.0
</span><span style='display:block; white-space:pre;color:#404040;'> * Remove patch-rename-version.diff because is deprecated
</span>---
science/bedtools/Portfile | 10 ++++------
science/bedtools/files/patch-rename-version.diff | 14 --------------
2 files changed, 4 insertions(+), 20 deletions(-)
<span style='display:block; white-space:pre;color:#808080;'>diff --git a/science/bedtools/Portfile b/science/bedtools/Portfile
</span><span style='display:block; white-space:pre;color:#808080;'>index bec7243287e..d7b064f427c 100644
</span><span style='display:block; white-space:pre;background:#e0e0ff;'>--- a/science/bedtools/Portfile
</span><span style='display:block; white-space:pre;background:#e0e0ff;'>+++ b/science/bedtools/Portfile
</span><span style='display:block; white-space:pre;background:#e0e0e0;'>@@ -3,7 +3,7 @@
</span> PortSystem 1.0
PortGroup github 1.0
<span style='display:block; white-space:pre;background:#ffe0e0;'>-github.setup arq5x bedtools2 2.29.2 v
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+github.setup arq5x bedtools2 2.30.0 v
</span>
name bedtools
categories science
<span style='display:block; white-space:pre;background:#e0e0e0;'>@@ -18,9 +18,9 @@ long_description The BEDTools utilities allow one to address common genomics
</span> The utilities are largely based on four widely-used file formats: \
BED, GFF/GTF, VCF, and SAM/BAM.
<span style='display:block; white-space:pre;background:#ffe0e0;'>-checksums rmd160 25eefac3397b98c1c055de92c9cbb360ee4efb59 \
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- sha256 66d4d74000549fd5a1f939dc2bc0417d743dec72575a709213058754ff6dd146 \
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- size 20638903
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+checksums rmd160 3e570d891072aaea45b896a3e1581e6b69cc9761 \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ sha256 985ecf5905af1b59443db5cdfdec3578b0510dea34ceb68ecb5b1ca48083be29 \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ size 20640283
</span>
compiler.cxx_standard 2011
<span style='display:block; white-space:pre;background:#e0e0e0;'>@@ -35,8 +35,6 @@ build.args-append CC=${configure.cc} \
</span>
use_parallel_build yes
<span style='display:block; white-space:pre;background:#ffe0e0;'>-patchfiles patch-rename-version.diff
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-
</span> post-build {
system -W ${worksrcpath}/docs "${build.cmd} SPHINXBUILD=${prefix}/bin/sphinx-build-3.8 html man"
}
<span style='display:block; white-space:pre;color:#808080;'>diff --git a/science/bedtools/files/patch-rename-version.diff b/science/bedtools/files/patch-rename-version.diff
</span>deleted file mode 100644
<span style='display:block; white-space:pre;color:#808080;'>index 9b3fd2f1f09..00000000000
</span><span style='display:block; white-space:pre;background:#e0e0ff;'>--- a/science/bedtools/files/patch-rename-version.diff
</span><span style='display:block; white-space:pre;background:#e0e0ff;'>+++ /dev/null
</span><span style='display:block; white-space:pre;background:#e0e0e0;'>@@ -1,14 +0,0 @@
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-diff --git src/utils/gzstream/version src/utils/gzstream/version
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-deleted file mode 100644
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-index 511137de..00000000
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>---- src/utils/gzstream/version
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+++ /dev/null
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-@@ -1 +0,0 @@
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>--1.5 (08 Jan 2003)
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-diff --git src/utils/gzstream/version.txt src/utils/gzstream/version.txt
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-new file mode 100644
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-index 00000000..511137de
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>---- /dev/null
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+++ src/utils/gzstream/version.txt
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-@@ -0,0 +1 @@
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+1.5 (08 Jan 2003)
</span></pre><pre style='margin:0'>
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