<pre style='margin:0'>
Jeremy Lavergne (nerdling) pushed a commit to branch master
in repository macports-ports.
</pre>
<p><a href="https://github.com/macports/macports-ports/commit/f4828c939519a5d783c99cf345d0b9128a980770">https://github.com/macports/macports-ports/commit/f4828c939519a5d783c99cf345d0b9128a980770</a></p>
<pre style="white-space: pre; background: #F8F8F8"><span style='display:block; white-space:pre;color:#808000;'>commit f4828c939519a5d783c99cf345d0b9128a980770
</span>Author: Jeremy Lavergne <snc@macports.org>
AuthorDate: Tue Jul 13 16:20:15 2021 -0400
<span style='display:block; white-space:pre;color:#404040;'> clustalx: drop from macports
</span>---
science/clustalx/Portfile | 53 -------------------------------------
science/clustalx/files/clustalx.in | 6 -----
science/clustalx/files/string.patch | 11 --------
3 files changed, 70 deletions(-)
<span style='display:block; white-space:pre;color:#808080;'>diff --git a/science/clustalx/Portfile b/science/clustalx/Portfile
</span>deleted file mode 100644
<span style='display:block; white-space:pre;color:#808080;'>index cca4d5bfe4d..00000000000
</span><span style='display:block; white-space:pre;background:#e0e0ff;'>--- a/science/clustalx/Portfile
</span><span style='display:block; white-space:pre;background:#e0e0ff;'>+++ /dev/null
</span><span style='display:block; white-space:pre;background:#e0e0e0;'>@@ -1,53 +0,0 @@
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-# -*- coding: utf-8; mode: tcl; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- vim:fenc=utf-8:ft=tcl:et:sw=4:ts=4:sts=4
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-PortSystem 1.0
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-PortGroup qmake 1.0
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-name clustalx
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-version 2.1
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-revision 1
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-categories science
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-maintainers {snc @nerdling} openmaintainer
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-license LGPL-3 GPL-3
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-description An interface for the ClustalW multiple sequence alignment\
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- program.
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-long_description ${name} provides an integrated environment for performing\
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- multiple sequence and profile alignments and analysing the\
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- results. The sequence alignment is displayed in a window on\
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- the screen. A versatile coloring scheme has been\
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- incorporated allowing you to highlight conserved features\
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- in the alignment. The pull-down menus at the top of the\
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- window allow you to select all the options required for\
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- traditional multiple sequence and profile alignment.
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-homepage http://www.clustal.org/clustal2/
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-platforms darwin
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-master_sites http://www.clustal.org/download/current/ \
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- ftp://ftp.ebi.ac.uk/pub/software/clustalw2/${version}/
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-dist_subdir ${name}/${version}_1
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-checksums rmd160 a50b74d2b698a6ab618c5ce8bcb0139976814ffd \
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- sha256 e10adb728c320598a165ca529f1aa3d2560061de0236e0a0926eaca9554afa05 \
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- size 341649
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-patchfiles string.patch
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-configure.ldflags-append \
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- -F${qt_frameworks_dir}
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-destroot {
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- xinstall -d ${destroot}${applications_dir}/${name}.app/Contents/MacOS
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- xinstall -d ${destroot}${applications_dir}/${name}.app/Contents/Resources
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- xinstall -m 755 {*}[glob ${worksrcpath}/${name}.app/Contents/MacOS/*] \
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- ${destroot}${applications_dir}/${name}.app/Contents/MacOS/
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- xinstall -m 755 {*}[glob ${worksrcpath}/${name}.app/Contents/Resources/*] \
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- ${destroot}${applications_dir}/${name}.app/Contents/Resources/
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- xinstall -m 644 -W ${worksrcpath} \
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- colprot.xml coldna.xml colprint.xml clustalx.hlp \
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- ${destroot}${applications_dir}/${name}.app/Contents/MacOS/
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-}
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-livecheck.type regex
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-livecheck.url ${homepage}
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-livecheck.regex "currently (\\d+(\\.\\d+)+)"
</span><span style='display:block; white-space:pre;color:#808080;'>diff --git a/science/clustalx/files/clustalx.in b/science/clustalx/files/clustalx.in
</span>deleted file mode 100644
<span style='display:block; white-space:pre;color:#808080;'>index c362fe02587..00000000000
</span><span style='display:block; white-space:pre;background:#e0e0ff;'>--- a/science/clustalx/files/clustalx.in
</span><span style='display:block; white-space:pre;background:#e0e0ff;'>+++ /dev/null
</span><span style='display:block; white-space:pre;background:#e0e0e0;'>@@ -1,6 +0,0 @@
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-#!/bin/bash
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-export OLDPWD=`pwd`
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-cd @PREFIX@/libexec/@NAME@/
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-./@NAME@
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-cd $OLDPWD
</span><span style='display:block; white-space:pre;color:#808080;'>diff --git a/science/clustalx/files/string.patch b/science/clustalx/files/string.patch
</span>deleted file mode 100644
<span style='display:block; white-space:pre;color:#808080;'>index 7f534b07d04..00000000000
</span><span style='display:block; white-space:pre;background:#e0e0ff;'>--- a/science/clustalx/files/string.patch
</span><span style='display:block; white-space:pre;background:#e0e0ff;'>+++ /dev/null
</span><span style='display:block; white-space:pre;background:#e0e0e0;'>@@ -1,11 +0,0 @@
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-error: implicit instantiation of undefined template 'std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >'
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>---- clustalW/general/VectorOutOfRange.h.orig 2010-11-17 04:12:30.000000000 -0600
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+++ clustalW/general/VectorOutOfRange.h 2018-10-23 02:30:15.000000000 -0500
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-@@ -5,6 +5,7 @@
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- */
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- #include <stdexcept>
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- #include <exception>
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+#include <string>
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- namespace clustalw
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- {
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-
</span></pre><pre style='margin:0'>
</pre>