<pre style='margin:0'>
Renee Otten (reneeotten) pushed a commit to branch master
in repository macports-ports.
</pre>
<p><a href="https://github.com/macports/macports-ports/commit/5b81d0fec46656d597f98d8ac21057e82a727756">https://github.com/macports/macports-ports/commit/5b81d0fec46656d597f98d8ac21057e82a727756</a></p>
<pre style="white-space: pre; background: #F8F8F8">The following commit(s) were added to refs/heads/master by this push:
<span style='display:block; white-space:pre;color:#404040;'> new 5b81d0fec46 py-MDAnalysis: update to version 2.0.0
</span>5b81d0fec46 is described below
<span style='display:block; white-space:pre;color:#808000;'>commit 5b81d0fec46656d597f98d8ac21057e82a727756
</span>Author: Bartlomiej Tywoniuk <btywoniuk@users.noreply.github.com>
AuthorDate: Mon Nov 22 13:38:43 2021 +0100
<span style='display:block; white-space:pre;color:#404040;'> py-MDAnalysis: update to version 2.0.0
</span><span style='display:block; white-space:pre;color:#404040;'>
</span><span style='display:block; white-space:pre;color:#404040;'> * add py39, remove py27 subport
</span>---
python/py-MDAnalysis/Portfile | 30 +++++++++++-----------------
python/py-MDAnalysis/files/patch-unistd.diff | 17 ----------------
2 files changed, 12 insertions(+), 35 deletions(-)
<span style='display:block; white-space:pre;color:#808080;'>diff --git a/python/py-MDAnalysis/Portfile b/python/py-MDAnalysis/Portfile
</span><span style='display:block; white-space:pre;color:#808080;'>index eee8a6993a7..9bf23755027 100644
</span><span style='display:block; white-space:pre;background:#e0e0ff;'>--- a/python/py-MDAnalysis/Portfile
</span><span style='display:block; white-space:pre;background:#e0e0ff;'>+++ b/python/py-MDAnalysis/Portfile
</span><span style='display:block; white-space:pre;background:#e0e0e0;'>@@ -4,32 +4,26 @@ PortSystem 1.0
</span> PortGroup python 1.0
name py-MDAnalysis
<span style='display:block; white-space:pre;background:#ffe0e0;'>-version 1.0.0
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+version 2.0.0
</span> revision 0
<span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span> categories-append science
<span style='display:block; white-space:pre;background:#ffe0e0;'>-platforms darwin
</span> license GPL-2+
<span style='display:block; white-space:pre;background:#ffe0e0;'>-
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-python.versions 27 36 37 38
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-
</span> maintainers {gmail.com:giovanni.bussi @GiovanniBussi} openmaintainer
<span style='display:block; white-space:pre;background:#ffe0e0;'>-description An object-oriented toolkit to analyze molecular dynamics trajectories generated by CHARMM, Gromacs, NAMD, LAMMPS, or Amber.
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-long_description ${description} \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+description An object-oriented toolkit to analyze molecular dynamics trajectories
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+long_description ${description} generated by CHARMM, Gromacs, NAMD, LAMMPS, or Amber. \
</span> It also reads other formats (e.g. PDB files and XYZ format trajectories. \
<span style='display:block; white-space:pre;background:#ffe0e0;'>- It can write most of the coordinate formats, too, together with atom selections for use \
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- in Gromacs, CHARMM, VMD and PyMOL.
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ It can write most of the coordinate formats, too, together with atom selections \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ for use in Gromacs, CHARMM, VMD and PyMOL.
</span>
homepage https://www.mdanalysis.org/
<span style='display:block; white-space:pre;background:#ffe0e0;'>-master_sites pypi:[string index ${python.rootname} 0]/${python.rootname}
</span>
<span style='display:block; white-space:pre;background:#ffe0e0;'>-distname ${python.rootname}-${version}
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+checksums rmd160 ece8d0a6ab8b0bb8e5625d547ebd821ec0c1ff20 \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ sha256 aa3079d1a82305eba58cf567fac8fc231940184ed88f9a4451be8433f4a06d3e \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ size 3436654
</span>
<span style='display:block; white-space:pre;background:#ffe0e0;'>-checksums rmd160 6ac6c5ad4ad83ff1227ec596cf47de76587d4478 \
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- sha256 f45a024aca45e390ff1c45ca90beb2180b78881be377e2a1aa9cd6c109bcfa81 \
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- size 19552874
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-patchfiles patch-unistd.diff
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+python.versions 36 37 38 39
</span>
if {${name} ne ${subport}} {
# OpenMP is disabled now
<span style='display:block; white-space:pre;background:#e0e0e0;'>@@ -41,12 +35,12 @@ if {${name} ne ${subport}} {
</span> port:py${python.version}-gsd \
port:py${python.version}-joblib \
port:py${python.version}-matplotlib \
<span style='display:block; white-space:pre;background:#ffe0e0;'>- port:py${python.version}-mock \
</span> port:py${python.version}-mmtf-python \
port:py${python.version}-networkx \
port:py${python.version}-numpy \
port:py${python.version}-scipy \
<span style='display:block; white-space:pre;background:#ffe0e0;'>- port:py${python.version}-six \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ port:py${python.version}-threadpoolctl \
</span> port:py${python.version}-tqdm
<span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span> livecheck.type none
}
<span style='display:block; white-space:pre;color:#808080;'>diff --git a/python/py-MDAnalysis/files/patch-unistd.diff b/python/py-MDAnalysis/files/patch-unistd.diff
</span>deleted file mode 100644
<span style='display:block; white-space:pre;color:#808080;'>index 606ac9c0894..00000000000
</span><span style='display:block; white-space:pre;background:#e0e0ff;'>--- a/python/py-MDAnalysis/files/patch-unistd.diff
</span><span style='display:block; white-space:pre;background:#e0e0ff;'>+++ /dev/null
</span><span style='display:block; white-space:pre;background:#e0e0e0;'>@@ -1,17 +0,0 @@
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>---- MDAnalysis/analysis/encore/dimensionality_reduction/src/spe.c.orig 2020-09-20 22:03:20.000000000 +0200
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+++ MDAnalysis/analysis/encore/dimensionality_reduction/src/spe.c 2020-09-20 22:03:38.000000000 +0200
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-@@ -27,12 +27,10 @@
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- #include <time.h>
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- #include <sys/types.h>
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>--#ifdef __unix__
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-- #include <unistd.h>
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>--#endif
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>--
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- #ifdef _WIN32
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- #include <io.h>
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+#else
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+ #include <unistd.h>
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- #endif
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- #define EPSILON 1e-8
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