<pre style='margin:0'>
David B. Evans (dbevans) pushed a commit to branch master
in repository macports-ports.
</pre>
<p><a href="https://github.com/macports/macports-ports/commit/1a123fbde860e12a0c8da8a696db781736d51bdf">https://github.com/macports/macports-ports/commit/1a123fbde860e12a0c8da8a696db781736d51bdf</a></p>
<pre style="white-space: pre; background: #F8F8F8">The following commit(s) were added to refs/heads/master by this push:
<span style='display:block; white-space:pre;color:#404040;'> new 1a123fbde86 p5-eval: fix fetch/livecheck issues, descriptions
</span>1a123fbde86 is described below
<span style='display:block; white-space:pre;color:#808000;'>commit 1a123fbde860e12a0c8da8a696db781736d51bdf
</span>Author: David B. Evans <devans@macports.org>
AuthorDate: Sun Mar 20 21:06:51 2022 -0700
<span style='display:block; white-space:pre;color:#404040;'> p5-eval: fix fetch/livecheck issues, descriptions
</span><span style='display:block; white-space:pre;color:#404040;'>
</span><span style='display:block; white-space:pre;color:#404040;'> Currently unable to fetch from upstream mirror_sites, either for
</span><span style='display:block; white-space:pre;color:#404040;'> fetch or livecheck due to certificate issue. Since there haven't
</span><span style='display:block; white-space:pre;color:#404040;'> been any code changes upstream, fetch current version from macports_distfiles
</span><span style='display:block; white-space:pre;color:#404040;'> and disable livecheck. Correct descriptions and reformat.
</span><span style='display:block; white-space:pre;color:#404040;'>
</span><span style='display:block; white-space:pre;color:#404040;'> No change in installed content.
</span>---
perl/p5-eval/Portfile | 27 ++++++++++++++++++---------
1 file changed, 18 insertions(+), 9 deletions(-)
<span style='display:block; white-space:pre;color:#808080;'>diff --git a/perl/p5-eval/Portfile b/perl/p5-eval/Portfile
</span><span style='display:block; white-space:pre;color:#808080;'>index 0af3f506177..504da4331f7 100644
</span><span style='display:block; white-space:pre;background:#e0e0ff;'>--- a/perl/p5-eval/Portfile
</span><span style='display:block; white-space:pre;background:#e0e0ff;'>+++ b/perl/p5-eval/Portfile
</span><span style='display:block; white-space:pre;background:#e0e0e0;'>@@ -10,15 +10,18 @@ revision 3
</span> license GPL
categories perl biology
maintainers cse.wustl.edu:rpz
<span style='display:block; white-space:pre;background:#ffe0e0;'>-description Perl module for parameter estimation with hidden Markov models.
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-long_description iPE is parameter estimation software for generalized hidden Markov models. \
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- For information and documentation, see http://genes.cse.wustl.edu.
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+description Eval is a flexible tool for analyzing the performance of gene-structure prediction programs.
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+long_description ${description} It provides summaries and graphical distributions for many statistics, \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ describing any set of annotations, regardless of their source. It also compares \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ sets of predictions to standard annotations and to one another.
</span>
homepage http://mblab.wustl.edu
<span style='display:block; white-space:pre;background:#ffe0e0;'>-master_sites http://mblab.wustl.edu/software/download/
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+# master_sites http://mblab.wustl.edu/software/download/
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+master_sites macports_distfiles
</span>
checksums rmd160 2f1572e4d9996760b48284fc5f2a589c56008a5d \
<span style='display:block; white-space:pre;background:#ffe0e0;'>- sha256 5cce1df4a08ab5fa5d81e572c876ed2bd02041f5ac3cea73d3f7eee87c7c1d9c
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ sha256 5cce1df4a08ab5fa5d81e572c876ed2bd02041f5ac3cea73d3f7eee87c7c1d9c \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ size 592357
</span>
platforms darwin
<span style='display:block; white-space:pre;background:#e0e0e0;'>@@ -33,10 +36,16 @@ if {${perl5.major} != ""} {
</span> set installvendorlib [perl5.extract_config installvendorlib]
file mkdir ${destroot}${installvendorlib}
xinstall -m 0644 -W ${worksrcpath} Eval.pm GTF.pm ${destroot}${installvendorlib}
<span style='display:block; white-space:pre;background:#ffe0e0;'>- xinstall -m 0755 -W ${worksrcpath} combine_eval_reports.pl eval.pl evaluate_gtf.pl filter_badlist.pl filter_gtfs.pl get_distribution.pl get_general_stats.pl get_overlap_stats.pl gff3_to_gtf.pl graph_gtfs.pl make_intron_lenght_vs_performance_graph.pl validate_gtf.pl validate_splice_sites.pl ${destroot}${prefix}/bin
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ xinstall -m 0755 -W ${worksrcpath} combine_eval_reports.pl eval.pl \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ evaluate_gtf.pl filter_badlist.pl filter_gtfs.pl get_distribution.pl \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ get_general_stats.pl get_overlap_stats.pl gff3_to_gtf.pl graph_gtfs.pl \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ make_intron_lenght_vs_performance_graph.pl validate_gtf.pl \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ validate_splice_sites.pl ${destroot}${prefix}/bin
</span> }
}
<span style='display:block; white-space:pre;background:#ffe0e0;'>-livecheck.type regex
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-livecheck.url ${master_sites}
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-livecheck.regex "eval-(\\d+(?:\\.\\d+)*)${extract.suffix}"
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+livecheck.type none
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+# master_sites seems to be broken (SSL certificate problem: unable to get local issuer certificate)
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+# livecheck.type regex
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+# livecheck.url ${master_sites}
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+# livecheck.regex "eval-(\\d+(?:\\.\\d+)*)${extract.suffix}"
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