<pre style='margin:0'>
Renee Otten (reneeotten) pushed a commit to branch master
in repository macports-ports.

</pre>
<p><a href="https://github.com/macports/macports-ports/commit/702f66ae888a74e17d16cd2a8e2ea73566e21537">https://github.com/macports/macports-ports/commit/702f66ae888a74e17d16cd2a8e2ea73566e21537</a></p>
<pre style="white-space: pre; background: #F8F8F8">The following commit(s) were added to refs/heads/master by this push:
<span style='display:block; white-space:pre;color:#404040;'>     new 702f66ae888 bali-phy-devel: new port, version 4.0-beta2
</span>702f66ae888 is described below

<span style='display:block; white-space:pre;color:#808000;'>commit 702f66ae888a74e17d16cd2a8e2ea73566e21537
</span>Author: Renee Otten <reneeotten@macports.org>
AuthorDate: Wed Mar 29 23:18:32 2023 -0400

<span style='display:block; white-space:pre;color:#404040;'>    bali-phy-devel: new port, version 4.0-beta2
</span>---
 science/bali-phy/Portfile                          | 23 ++++++++++++++++++----
 science/bali-phy/files/patch-bp_analyze-devel.diff |  8 ++++++++
 2 files changed, 27 insertions(+), 4 deletions(-)

<span style='display:block; white-space:pre;color:#808080;'>diff --git a/science/bali-phy/Portfile b/science/bali-phy/Portfile
</span><span style='display:block; white-space:pre;color:#808080;'>index 30b62fdb4e9..2de23f35c72 100644
</span><span style='display:block; white-space:pre;background:#e0e0ff;'>--- a/science/bali-phy/Portfile
</span><span style='display:block; white-space:pre;background:#e0e0ff;'>+++ b/science/bali-phy/Portfile
</span><span style='display:block; white-space:pre;background:#e0e0e0;'>@@ -9,7 +9,8 @@ PortGroup           legacysupport 1.1
</span> github.setup        bredelings BAli-Phy 3.6.1
 github.tarball_from archive
 name                bali-phy
<span style='display:block; white-space:pre;background:#ffe0e0;'>-revision            0
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+conflicts           bali-phy-devel
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+revision            1
</span> 
 categories          science
 platforms           darwin
<span style='display:block; white-space:pre;background:#e0e0e0;'>@@ -38,7 +39,7 @@ legacysupport.newest_darwin_requires_legacy 16
</span> legacysupport.use_mp_libcxx yes
 
 # use the same Python version as in meson
<span style='display:block; white-space:pre;background:#ffe0e0;'>-set python_version 3.9
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+set python_version 3.11
</span> set python_ver_no_dot [string map {. {}} ${python_version}]
 set python_bin ${frameworks_dir}/Python.framework/Versions/${python_version}/bin/python${python_version}
 
<span style='display:block; white-space:pre;background:#e0e0e0;'>@@ -47,9 +48,9 @@ variant doc description {Build documentation and man pages} {
</span>                     port:pandoc
 }
 
<span style='display:block; white-space:pre;background:#ffe0e0;'>-# pandoc / stack fails to build on macOS 10.11 and older, and on arm64
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+# pandoc / stack fails to build on macOS 10.12 and older
</span> # see: https://ports.macports.org/port/pandoc/summary
<span style='display:block; white-space:pre;background:#ffe0e0;'>-if {${os.platform} eq "darwin" && ${os.major} > 15 && ${build_arch} ne "arm64"} {
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+if {${os.platform} eq "darwin" && ${os.major} > 16} {
</span>     default_variants +doc
 }
 
<span style='display:block; white-space:pre;background:#e0e0e0;'>@@ -58,6 +59,19 @@ patchfiles-append   patch-bali_phy_pkg.diff \
</span>                     patch-bp_analyze.diff \
                     patch-run_tests.py.diff
 
<span style='display:block; white-space:pre;background:#e0ffe0;'>+subport bali-phy-devel {
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+    github.setup        bredelings BAli-Phy 4.0-beta2
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+    github.tarball_from archive
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+    conflicts           bali-phy
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+    revision            0
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+    checksums           rmd160  2ebc64e46f54ca01a830cc328cf964cde3229ae0 \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+                        sha256  033ba538f0e72e5bdcd7626e1a1eb2d4ab6aec17ce6cc528260efca528066c56 \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+                        size    4152089
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+    patchfiles-replace  patch-bp_analyze.diff \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+                        patch-bp_analyze-devel.diff
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+    compiler.cxx_standard   2020
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+}
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span> post-patch {
     reinplace "s|@@PYTHON_BIN@@|${python_bin}|g" ${worksrcpath}/tests/run-tests.py \
         ${worksrcpath}/scripts/bp-analyze
<span style='display:block; white-space:pre;background:#e0e0e0;'>@@ -66,6 +80,7 @@ post-patch {
</span>         ${worksrcpath}/examples/sequences/lrRNA/keep.pl
 }
 
<span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span> configure.post_args-append  --buildtype=release
 
 depends_build-append \
<span style='display:block; white-space:pre;color:#808080;'>diff --git a/science/bali-phy/files/patch-bp_analyze-devel.diff b/science/bali-phy/files/patch-bp_analyze-devel.diff
</span>new file mode 100644
<span style='display:block; white-space:pre;color:#808080;'>index 00000000000..5911592f136
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>--- /dev/null
</span><span style='display:block; white-space:pre;background:#e0e0ff;'>+++ b/science/bali-phy/files/patch-bp_analyze-devel.diff
</span><span style='display:block; white-space:pre;background:#e0e0e0;'>@@ -0,0 +1,8 @@
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+--- scripts/bp-analyze.orig        2023-03-21 18:11:40
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>++++ scripts/bp-analyze     2023-03-29 23:28:48
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+@@ -1,4 +1,4 @@
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+-#!/usr/bin/env python3
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>++#!@@PYTHON_BIN@@
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ 
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ # make R test for whether R (i) is found, (ii) runs, and (iii) can generate svgs
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ # switch to pathlib
</span></pre><pre style='margin:0'>

</pre>