<pre style='margin:0'>
Herby Gillot (herbygillot) pushed a commit to branch master
in repository macports-ports.

</pre>
<p><a href="https://github.com/macports/macports-ports/commit/87ad67571b0ece2ce4a6c8faae19bf9ca65ad1f4">https://github.com/macports/macports-ports/commit/87ad67571b0ece2ce4a6c8faae19bf9ca65ad1f4</a></p>
<pre style="white-space: pre; background: #F8F8F8"><span style='display:block; white-space:pre;color:#808000;'>commit 87ad67571b0ece2ce4a6c8faae19bf9ca65ad1f4
</span>Author: Sergey Fedorov <vital.had@gmail.com>
AuthorDate: Wed Sep 6 22:07:11 2023 +0700

<span style='display:block; white-space:pre;color:#404040;'>    R-PeakError, R-PeakSeg*: new ports
</span>---
 R/R-PeakError/Portfile      | 19 +++++++++++++++++++
 R/R-PeakSegDP/Portfile      | 20 ++++++++++++++++++++
 R/R-PeakSegJoint/Portfile   | 23 +++++++++++++++++++++++
 R/R-PeakSegOptimal/Portfile | 23 +++++++++++++++++++++++
 4 files changed, 85 insertions(+)

<span style='display:block; white-space:pre;color:#808080;'>diff --git a/R/R-PeakError/Portfile b/R/R-PeakError/Portfile
</span>new file mode 100644
<span style='display:block; white-space:pre;color:#808080;'>index 00000000000..7bedf0c6315
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>--- /dev/null
</span><span style='display:block; white-space:pre;background:#e0e0ff;'>+++ b/R/R-PeakError/Portfile
</span><span style='display:block; white-space:pre;background:#e0e0e0;'>@@ -0,0 +1,19 @@
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+# -*- coding: utf-8; mode: tcl; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- vim:fenc=utf-8:ft=tcl:et:sw=4:ts=4:sts=4
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+PortSystem          1.0
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+PortGroup           R 1.0
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+R.setup             cran tdhock PeakError 2023.9.4
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+revision            0
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+maintainers         nomaintainer
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+license             GPL-3
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+description         Compute the label error of peak calls
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+long_description    {*}${description}
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+checksums           rmd160  cd210a395868600dda3fb0bb0f088ecee42bbf8a \
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</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+                    size    7810
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+depends_test-append port:R-ggplot2 \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+                    port:R-testthat
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+test.run            yes
</span><span style='display:block; white-space:pre;color:#808080;'>diff --git a/R/R-PeakSegDP/Portfile b/R/R-PeakSegDP/Portfile
</span>new file mode 100644
<span style='display:block; white-space:pre;color:#808080;'>index 00000000000..e1e39854553
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>--- /dev/null
</span><span style='display:block; white-space:pre;background:#e0e0ff;'>+++ b/R/R-PeakSegDP/Portfile
</span><span style='display:block; white-space:pre;background:#e0e0e0;'>@@ -0,0 +1,20 @@
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+# -*- coding: utf-8; mode: tcl; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- vim:fenc=utf-8:ft=tcl:et:sw=4:ts=4:sts=4
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+PortSystem          1.0
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+PortGroup           R 1.0
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+R.setup             cran tdhock PeakSegDP 2017.08.15
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+revision            0
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+maintainers         nomaintainer
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+license             GPL-3
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+description         Dynamic programming algorithm for peak detection in ChIP-Seq data
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+long_description    {*}${description}
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+checksums           rmd160  cea2643feaf219e6372bfeebee1d6782337f21ef \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+                    sha256  7cc20c25f85e5699a16a43b54b6a60e49f73b81434ce502688d8b3194923aed9 \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+                    size    508443
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+depends_test-append port:R-ggplot2 \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+                    port:R-penaltyLearning \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+                    port:R-testthat
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+test.run            yes
</span><span style='display:block; white-space:pre;color:#808080;'>diff --git a/R/R-PeakSegJoint/Portfile b/R/R-PeakSegJoint/Portfile
</span>new file mode 100644
<span style='display:block; white-space:pre;color:#808080;'>index 00000000000..b33637a0fa4
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>--- /dev/null
</span><span style='display:block; white-space:pre;background:#e0e0ff;'>+++ b/R/R-PeakSegJoint/Portfile
</span><span style='display:block; white-space:pre;background:#e0e0e0;'>@@ -0,0 +1,23 @@
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+# -*- coding: utf-8; mode: tcl; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- vim:fenc=utf-8:ft=tcl:et:sw=4:ts=4:sts=4
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+PortSystem          1.0
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+PortGroup           R 1.0
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+R.setup             cran tdhock PeakSegJoint 2023.4.24
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+revision            0
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+maintainers         nomaintainer
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+license             GPL-3
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+description         Joint peak detection in several ChIP-Seq samples
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+long_description    {*}${description}
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+checksums           rmd160  f76377f7b0168616554fddeaa5087dc6925dbadc \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+                    sha256  43ea49d1708fe05b774446bbf8c16aed0ad63bc1e612d81eb3d2a8e17d4b5379 \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+                    size    787443
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+depends_lib-append  port:R-PeakError \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+                    port:R-penaltyLearning
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+depends_test-append port:R-ggplot2 \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+                    port:R-microbenchmark \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+                    port:R-testthat
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+test.run            yes
</span><span style='display:block; white-space:pre;color:#808080;'>diff --git a/R/R-PeakSegOptimal/Portfile b/R/R-PeakSegOptimal/Portfile
</span>new file mode 100644
<span style='display:block; white-space:pre;color:#808080;'>index 00000000000..be0dd8d3fba
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>--- /dev/null
</span><span style='display:block; white-space:pre;background:#e0e0ff;'>+++ b/R/R-PeakSegOptimal/Portfile
</span><span style='display:block; white-space:pre;background:#e0e0e0;'>@@ -0,0 +1,23 @@
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+# -*- coding: utf-8; mode: tcl; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- vim:fenc=utf-8:ft=tcl:et:sw=4:ts=4:sts=4
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
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</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+R.setup             cran tdhock PeakSegOptimal 2018.05.25
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+revision            0
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</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+description         Optimal segmentation subject to up-down constraints
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+long_description    {*}${description}
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+checksums           rmd160  8548173b403d7e2ff253edc7a3ed2fa3b2a0200a \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+                    sha256  445e3f31a07314dd072f7bc30f876e268155d95d8fcea1f74107824cfc976948 \
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</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+depends_lib-append  port:R-penaltyLearning
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+depends_test-append port:R-data.table \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+                    port:R-ggplot2 \
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</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+test.run            yes
</span></pre><pre style='margin:0'>

</pre>