<pre style='margin:0'>
Herby Gillot (herbygillot) pushed a commit to branch master
in repository macports-ports.

</pre>
<p><a href="https://github.com/macports/macports-ports/commit/9cb5569c2ab5004de6347fda6c52db5f159f24cd">https://github.com/macports/macports-ports/commit/9cb5569c2ab5004de6347fda6c52db5f159f24cd</a></p>
<pre style="white-space: pre; background: #F8F8F8"><span style='display:block; white-space:pre;color:#808000;'>commit 9cb5569c2ab5004de6347fda6c52db5f159f24cd
</span>Author: barracuda156 <vital.had@gmail.com>
AuthorDate: Sun Oct 29 00:50:38 2023 +0800

<span style='display:block; white-space:pre;color:#404040;'>    R-edgeR: update to 4.0.0, support testing
</span>---
 R/R-edgeR/Portfile                         | 22 ++++++++++++++++++----
 R/R-edgeR/files/patch-no-org.Hs.eg.db.diff | 11 +++++++++++
 2 files changed, 29 insertions(+), 4 deletions(-)

<span style='display:block; white-space:pre;color:#808080;'>diff --git a/R/R-edgeR/Portfile b/R/R-edgeR/Portfile
</span><span style='display:block; white-space:pre;color:#808080;'>index e2991fd619c..d158f22fec9 100644
</span><span style='display:block; white-space:pre;background:#e0e0ff;'>--- a/R/R-edgeR/Portfile
</span><span style='display:block; white-space:pre;background:#e0e0ff;'>+++ b/R/R-edgeR/Portfile
</span><span style='display:block; white-space:pre;background:#e0e0e0;'>@@ -3,18 +3,32 @@
</span> PortSystem          1.0
 PortGroup           R 1.0
 
<span style='display:block; white-space:pre;background:#ffe0e0;'>-R.setup             bioconductor Bioconductor edgeR 3.42.2
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+R.setup             bioconductor Bioconductor edgeR 4.0.0
</span> revision            0
 maintainers         nomaintainer
 license             GPL-2+
 description         Empirical analysis of digital gene expression data in R
 long_description    {*}${description}
<span style='display:block; white-space:pre;background:#ffe0e0;'>-checksums           rmd160  4b9463b2c5609601e2b70dd9cc5509fbc3561ac9 \
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-                    sha256  32a734348e825d6cd18711f139f972753cb4481a9ebaab19376e8b50851d5aef \
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-                    size    1814881
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+checksums           rmd160  32955fce1bc5e51ebcaa99dfecfdb609a02814e3 \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+                    sha256  87fcd239c5beb80a607eb85e00e2afc04eb36b99c90f6978f024d01e01989f2b \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+                    size    3569346
</span> 
 depends_lib-append  port:R-limma \
                     port:R-locfit \
                     port:R-Rcpp
 
<span style='display:block; white-space:pre;background:#e0ffe0;'>+patchfiles          patch-no-org.Hs.eg.db.diff
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span> compilers.setup     require_fortran
<span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+depends_test-append port:R-AnnotationDbi \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+                    port:R-Biobase \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+                    port:R-BiocStyle \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+                    port:R-jsonlite \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+                    port:R-knitr \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+                    port:R-readr \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+                    port:R-rhdf5 \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+                    port:R-SeuratObject \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+                    port:R-SummarizedExperiment
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+test.run            yes
</span><span style='display:block; white-space:pre;color:#808080;'>diff --git a/R/R-edgeR/files/patch-no-org.Hs.eg.db.diff b/R/R-edgeR/files/patch-no-org.Hs.eg.db.diff
</span>new file mode 100644
<span style='display:block; white-space:pre;color:#808080;'>index 00000000000..9a43b201c5d
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>--- /dev/null
</span><span style='display:block; white-space:pre;background:#e0e0ff;'>+++ b/R/R-edgeR/files/patch-no-org.Hs.eg.db.diff
</span><span style='display:block; white-space:pre;background:#e0e0e0;'>@@ -0,0 +1,11 @@
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+--- DESCRIPTION    2023-10-25 05:06:02.000000000 +0800
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>++++ DESCRIPTION    2023-10-29 00:06:54.000000000 +0800
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+@@ -9,7 +9,7 @@
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ Depends: R (>= 3.6.0), limma (>= 3.41.5)
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ Imports: methods, graphics, stats, utils, locfit, Rcpp
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ Suggests: jsonlite, readr, rhdf5, splines, knitr, AnnotationDbi,
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+-        Biobase, BiocStyle, SummarizedExperiment, org.Hs.eg.db, Matrix,
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>++        Biobase, BiocStyle, SummarizedExperiment, Matrix,
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+         SeuratObject
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ LinkingTo: Rcpp
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ VignetteBuilder: knitr
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