<pre style='margin:0'>
Herby Gillot (herbygillot) pushed a commit to branch master
in repository macports-ports.

</pre>
<p><a href="https://github.com/macports/macports-ports/commit/13d628b4611832bb6dcc985ba3b881837722019d">https://github.com/macports/macports-ports/commit/13d628b4611832bb6dcc985ba3b881837722019d</a></p>
<pre style="white-space: pre; background: #F8F8F8"><span style='display:block; white-space:pre;color:#808000;'>commit 13d628b4611832bb6dcc985ba3b881837722019d
</span>Author: barracuda156 <vital.had@gmail.com>
AuthorDate: Fri Nov 3 11:50:05 2023 +0800

<span style='display:block; white-space:pre;color:#404040;'>    R-SeqArray: new port
</span>---
 R/R-SeqArray/Portfile                      | 39 ++++++++++++++++++++++++++++++
 R/R-SeqArray/files/patch-no-SNPRelate.diff | 11 +++++++++
 2 files changed, 50 insertions(+)

<span style='display:block; white-space:pre;color:#808080;'>diff --git a/R/R-SeqArray/Portfile b/R/R-SeqArray/Portfile
</span>new file mode 100644
<span style='display:block; white-space:pre;color:#808080;'>index 00000000000..29003a2a0ed
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>--- /dev/null
</span><span style='display:block; white-space:pre;background:#e0e0ff;'>+++ b/R/R-SeqArray/Portfile
</span><span style='display:block; white-space:pre;background:#e0e0e0;'>@@ -0,0 +1,39 @@
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+# -*- coding: utf-8; mode: tcl; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- vim:fenc=utf-8:ft=tcl:et:sw=4:ts=4:sts=4
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+PortSystem          1.0
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+PortGroup           R 1.0
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+R.setup             bioconductor zhengxwen SeqArray 1.42.0
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+revision            0
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+maintainers         nomaintainer
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+license             GPL-3
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+description         Data management of large-scale whole-genome sequence variant calls
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+long_description    {*}${description}
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+homepage            https://github.com/zhengxwen/SeqArray
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+checksums           rmd160  3649acebd7e4ada9c5b5f853266468399bd15109 \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+                    sha256  acc791bd9d36ca58b8330fd665b8e03c15be01202d04fba3f16f9a3ea007467f \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+                    size    3592241
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+depends_lib-append  port:R-Biostrings \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+                    port:R-gdsfmt \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+                    port:R-GenomeInfoDb \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+                    port:R-GenomicRanges \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+                    port:R-IRanges \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+                    port:R-S4Vectors
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+patchfiles          patch-no-SNPRelate.diff
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+depends_test-append port:R-Biobase \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+                    port:R-BiocGenerics \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+                    port:R-BiocParallel \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+                    port:R-crayon \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+                    port:R-digest \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+                    port:R-knitr \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+                    port:R-markdown \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+                    port:R-Rcpp \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+                    port:R-rmarkdown \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+                    port:R-Rsamtools \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+                    port:R-RUnit \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+                    port:R-VariantAnnotation
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+test.run            yes
</span><span style='display:block; white-space:pre;color:#808080;'>diff --git a/R/R-SeqArray/files/patch-no-SNPRelate.diff b/R/R-SeqArray/files/patch-no-SNPRelate.diff
</span>new file mode 100644
<span style='display:block; white-space:pre;color:#808080;'>index 00000000000..7e968d18db0
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>--- /dev/null
</span><span style='display:block; white-space:pre;background:#e0e0ff;'>+++ b/R/R-SeqArray/files/patch-no-SNPRelate.diff
</span><span style='display:block; white-space:pre;background:#e0e0e0;'>@@ -0,0 +1,11 @@
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+--- DESCRIPTION    2023-10-25 07:03:06.000000000 +0800
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>++++ DESCRIPTION    2023-11-03 11:34:25.000000000 +0800
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+@@ -8,7 +8,7 @@
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ Imports: methods, parallel, IRanges, GenomicRanges, GenomeInfoDb,
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+         Biostrings, S4Vectors
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ LinkingTo: gdsfmt
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+-Suggests: Biobase, BiocGenerics, BiocParallel, RUnit, Rcpp, SNPRelate,
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>++Suggests: Biobase, BiocGenerics, BiocParallel, RUnit, Rcpp,
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+         digest, crayon, knitr, markdown, rmarkdown, Rsamtools,
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+         VariantAnnotation
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ Authors@R: c(person("Xiuwen", "Zheng", role=c("aut", "cre"),
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