<pre style='margin:0'>
Herby Gillot (herbygillot) pushed a commit to branch master
in repository macports-ports.
</pre>
<p><a href="https://github.com/macports/macports-ports/commit/6b03ecca8f0e44ac86da8a99f1f5bbd9da0142a8">https://github.com/macports/macports-ports/commit/6b03ecca8f0e44ac86da8a99f1f5bbd9da0142a8</a></p>
<pre style="white-space: pre; background: #F8F8F8"><span style='display:block; white-space:pre;color:#808000;'>commit 6b03ecca8f0e44ac86da8a99f1f5bbd9da0142a8
</span>Author: barracuda156 <vital.had@gmail.com>
AuthorDate: Sun Jan 28 17:04:27 2024 +0800
<span style='display:block; white-space:pre;color:#404040;'> R-bayesWatch: new port
</span>---
R/R-bayesWatch/Portfile | 32 +++++++++++++++++++++++++++++
R/R-bayesWatch/files/patch-fix-isnan.diff | 34 +++++++++++++++++++++++++++++++
2 files changed, 66 insertions(+)
<span style='display:block; white-space:pre;color:#808080;'>diff --git a/R/R-bayesWatch/Portfile b/R/R-bayesWatch/Portfile
</span>new file mode 100644
<span style='display:block; white-space:pre;color:#808080;'>index 00000000000..662928b62ec
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>--- /dev/null
</span><span style='display:block; white-space:pre;background:#e0e0ff;'>+++ b/R/R-bayesWatch/Portfile
</span><span style='display:block; white-space:pre;background:#e0e0e0;'>@@ -0,0 +1,32 @@
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+# -*- coding: utf-8; mode: tcl; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- vim:fenc=utf-8:ft=tcl:et:sw=4:ts=4:sts=4
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+PortSystem 1.0
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+PortGroup R 1.0
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+R.setup cran murph290 bayesWatch 0.1.3
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+revision 0
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+maintainers {@barracuda156 gmail.com:vital.had} openmaintainer
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+license GPL-2+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+description Bayesian change-point detection for process monitoring with fault detection
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+long_description {*}${description}
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+checksums rmd160 6922200282975114705cebee99f65824607583c2 \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ sha256 c178ab6f82358b6dcb5672bd6a1fde55709b6f2911d13f7d789215cc90e96e12 \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ size 2254002
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+depends_lib-append port:R-BDgraph \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ port:R-BH \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ port:R-CholWishart \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ port:R-ess \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ port:R-ggplot2 \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ port:R-gridExtra \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ port:R-Hotelling \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ port:R-Rcpp \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ port:R-RcppArmadillo \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ port:R-RcppEigen
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+# error: 'isnan' was not declared in this scope; did you mean 'std::isnan'?
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+patchfiles patch-fix-isnan.diff
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+compilers.setup require_fortran
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+test.run yes
</span><span style='display:block; white-space:pre;color:#808080;'>diff --git a/R/R-bayesWatch/files/patch-fix-isnan.diff b/R/R-bayesWatch/files/patch-fix-isnan.diff
</span>new file mode 100644
<span style='display:block; white-space:pre;color:#808080;'>index 00000000000..619a1a7f746
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>--- /dev/null
</span><span style='display:block; white-space:pre;background:#e0e0ff;'>+++ b/R/R-bayesWatch/files/patch-fix-isnan.diff
</span><span style='display:block; white-space:pre;background:#e0e0e0;'>@@ -0,0 +1,34 @@
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+--- src/mixture_redraw_functions.cpp 2023-10-30 03:45:31.000000000 +0800
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>++++ src/mixture_redraw_functions.cpp 2024-01-28 17:01:00.000000000 +0800
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+@@ -15,7 +15,7 @@
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ double calc_logprob_Gibbs_comp(const arma::mat& current_precision, const arma::vec& current_mu, const arma::vec& regime_comp_log_probs,
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ const arma::mat& current_data, int proposed_component) {
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ double log_prob = 0;
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+- if(isnan(regime_comp_log_probs.at(proposed_component)) ){
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>++ if(std::isnan(regime_comp_log_probs.at(proposed_component)) ){
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ log_prob = -std::numeric_limits<double>::infinity();
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ } else {
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ log_prob = (double)arma::as_scalar(regime_comp_log_probs.at(proposed_component)) +
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+@@ -69,7 +69,7 @@
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ prob_first = exp(log_prob_first)/(exp(log_prob_first)+exp(log_prob_second));
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ prob_second = exp(log_prob_second)/(exp(log_prob_first)+exp(log_prob_second));
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ unif_draw = arma::randu<double>();
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+- if(isnan(prob_first)){
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>++ if(std::isnan(prob_first)){
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ assignments_launch.at(data_value_index-1) = first_component;
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ continue;
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+@@ -130,11 +130,11 @@
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ exp_distribution = exp(log_prob_of_each_comp);
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ total_density_values = accu(exp_distribution);
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+- if(isnan(total_density_values)){
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>++ if(std::isnan(total_density_values)){
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ continue;
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ }
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ rand_value = arma::randu<double>() * total_density_values;
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+- if(isnan(rand_value)){
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>++ if(std::isnan(rand_value)){
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ continue;
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ }
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ sum_density_values = 0;
</span></pre><pre style='margin:0'>
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