<pre style='margin:0'>
Herby Gillot (herbygillot) pushed a commit to branch master
in repository macports-ports.
</pre>
<p><a href="https://github.com/macports/macports-ports/commit/5281f10d01e0c3aa60995c8969d768ab92832b08">https://github.com/macports/macports-ports/commit/5281f10d01e0c3aa60995c8969d768ab92832b08</a></p>
<pre style="white-space: pre; background: #F8F8F8"><span style='display:block; white-space:pre;color:#808000;'>commit 5281f10d01e0c3aa60995c8969d768ab92832b08
</span>Author: barracuda156 <vital.had@gmail.com>
AuthorDate: Wed Apr 17 12:37:45 2024 +0800
<span style='display:block; white-space:pre;color:#404040;'> R-fastcpd: update to 0.14.0, add missing test deps
</span>---
R/R-DNAcopy/Portfile | 16 +++++++++++++
R/R-PSCBS/Portfile | 31 +++++++++++++++++++++++++
R/R-VARDetect/Portfile | 31 +++++++++++++++++++++++++
R/R-acnr/Portfile | 23 ++++++++++++++++++
R/R-aroma.light/Portfile | 27 ++++++++++++++++++++++
R/R-fastcpd/Portfile | 13 ++++++-----
R/R-fastcpd/files/patch-drop-missing-deps.diff | 16 -------------
R/R-fastcpd/files/patch-tests-no-parallel.diff | 2 +-
R/R-jointseg/Portfile | 29 +++++++++++++++++++++++
R/R-picasso/Portfile | 22 ++++++++++++++++++
R/R-sparsevar/Portfile | 32 ++++++++++++++++++++++++++
11 files changed, 219 insertions(+), 23 deletions(-)
<span style='display:block; white-space:pre;color:#808080;'>diff --git a/R/R-DNAcopy/Portfile b/R/R-DNAcopy/Portfile
</span>new file mode 100644
<span style='display:block; white-space:pre;color:#808080;'>index 00000000000..230b5143839
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>--- /dev/null
</span><span style='display:block; white-space:pre;background:#e0e0ff;'>+++ b/R/R-DNAcopy/Portfile
</span><span style='display:block; white-space:pre;background:#e0e0e0;'>@@ -0,0 +1,16 @@
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+# -*- coding: utf-8; mode: tcl; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- vim:fenc=utf-8:ft=tcl:et:sw=4:ts=4:sts=4
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+PortSystem 1.0
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+PortGroup R 1.0
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+R.setup bioconductor Bioconductor DNAcopy 1.76.0
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+revision 0
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+maintainers nomaintainer
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+license GPL-2+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+description DNA copy number data analysis
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+long_description {*}${description}
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+checksums rmd160 e82b27d63eda2d3cb596a2bebec7214773e4f7fe \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ sha256 dff9a0244fe0294c690bdfe803b0d85b9f8a96cca6e9ea315282a25d8e8dd243 \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ size 296724
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+compilers.setup require_fortran
</span><span style='display:block; white-space:pre;color:#808080;'>diff --git a/R/R-PSCBS/Portfile b/R/R-PSCBS/Portfile
</span>new file mode 100644
<span style='display:block; white-space:pre;color:#808080;'>index 00000000000..a9dfe87feef
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>--- /dev/null
</span><span style='display:block; white-space:pre;background:#e0e0ff;'>+++ b/R/R-PSCBS/Portfile
</span><span style='display:block; white-space:pre;background:#e0e0e0;'>@@ -0,0 +1,31 @@
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+# -*- coding: utf-8; mode: tcl; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- vim:fenc=utf-8:ft=tcl:et:sw=4:ts=4:sts=4
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+PortSystem 1.0
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+PortGroup R 1.0
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+R.setup github HenrikBengtsson PSCBS 0.67.0
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+revision 0
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+maintainers nomaintainer
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+license GPL-2+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+description Analysis of parent-specific DNA copy numbers
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+long_description {*}${description}
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+checksums rmd160 d611f948613443db5576b596e92b5d25b9336427 \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ sha256 70ef4cbcf97610d6f12b589199025da07bcd79086a0b19decc2ba30cbd0fdd73 \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ size 3064686
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+supported_archs noarch
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+depends_lib-append port:R-aroma.light \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ port:R-DNAcopy \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ port:R-future \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ port:R-listenv \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ port:R-matrixStats \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ port:R-R.cache \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ port:R-R.methodsS3 \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ port:R-R.oo \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ port:R-R.utils
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+depends_test-append port:R-ggplot2 \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ port:R-R.devices \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ port:R-R.rsp
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+test.run yes
</span><span style='display:block; white-space:pre;color:#808080;'>diff --git a/R/R-VARDetect/Portfile b/R/R-VARDetect/Portfile
</span>new file mode 100644
<span style='display:block; white-space:pre;color:#808080;'>index 00000000000..8a21ff22911
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>--- /dev/null
</span><span style='display:block; white-space:pre;background:#e0e0ff;'>+++ b/R/R-VARDetect/Portfile
</span><span style='display:block; white-space:pre;background:#e0e0e0;'>@@ -0,0 +1,31 @@
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+# -*- coding: utf-8; mode: tcl; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- vim:fenc=utf-8:ft=tcl:et:sw=4:ts=4:sts=4
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+PortSystem 1.0
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+PortGroup R 1.0
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+R.setup cran baiyue VARDetect 0.1.6
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+revision 0
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+categories-append math
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+maintainers {@barracuda156 gmail.com:vital.had} openmaintainer
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+license GPL-2
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+description Multiple change point detection \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ in structural VAR models
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+long_description {*}${description}
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+checksums rmd160 334007f19a7b350a64c1f7f695a488587c743e5b \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ sha256 6b6b423733697a7ac756e619c9258201b8911fa00744cca4ab6d8db2c8f334fb \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ size 185205
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+depends_lib-append port:R-igraph \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ port:R-MTS \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ port:R-mvtnorm \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ port:R-pracma \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ port:R-Rcpp \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ port:R-RcppArmadillo \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ port:R-sparsevar
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+compilers.setup require_fortran
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+depends_test-append port:R-knitr \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ port:R-rmarkdown
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+test.run yes
</span><span style='display:block; white-space:pre;color:#808080;'>diff --git a/R/R-acnr/Portfile b/R/R-acnr/Portfile
</span>new file mode 100644
<span style='display:block; white-space:pre;color:#808080;'>index 00000000000..a239411d18d
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>--- /dev/null
</span><span style='display:block; white-space:pre;background:#e0e0ff;'>+++ b/R/R-acnr/Portfile
</span><span style='display:block; white-space:pre;background:#e0e0e0;'>@@ -0,0 +1,23 @@
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+# -*- coding: utf-8; mode: tcl; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- vim:fenc=utf-8:ft=tcl:et:sw=4:ts=4:sts=4
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+PortSystem 1.0
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+PortGroup R 1.0
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+R.setup cran mpierrejean acnr 1.0.0
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+revision 0
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+maintainers nomaintainer
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+license LGPL-2.1+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+description Annotated Copy-Number Regions
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+long_description {*}${description}
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+homepage https://github.com/mpierrejean/acnr
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+checksums rmd160 1497eb574254fe40bc60e0b4290f07bf2da4f051 \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ sha256 d5b324b96afae39fb6f4d9283b06cd372e6c9dc4fadbe8845ac75c7922c1f020 \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ size 2828013
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+supported_archs noarch
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+depends_test-append port:R-knitr \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ port:R-R.utils \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ port:R-rmarkdown \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ port:R-testthat
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+test.run yes
</span><span style='display:block; white-space:pre;color:#808080;'>diff --git a/R/R-aroma.light/Portfile b/R/R-aroma.light/Portfile
</span>new file mode 100644
<span style='display:block; white-space:pre;color:#808080;'>index 00000000000..b23560270ff
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>--- /dev/null
</span><span style='display:block; white-space:pre;background:#e0e0ff;'>+++ b/R/R-aroma.light/Portfile
</span><span style='display:block; white-space:pre;background:#e0e0e0;'>@@ -0,0 +1,27 @@
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+# -*- coding: utf-8; mode: tcl; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- vim:fenc=utf-8:ft=tcl:et:sw=4:ts=4:sts=4
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+PortSystem 1.0
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+PortGroup R 1.0
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+# GitHub version lags behind.
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+R.setup bioconductor Bioconductor aroma.light 3.32.0
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+revision 0
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+maintainers nomaintainer
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+license GPL-2+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+description Light-weight methods for normalization and visualization \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ of microarray data
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+long_description {*}${description} using only basic R data types.
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+homepage https://github.com/HenrikBengtsson/aroma.light
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+checksums rmd160 fffcd7ccb54ba82482aa3dd1c8a33139e1f8f1fa \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ sha256 68a1adac23a4f756bc6369af82f54de57c717bfe1e5e3d54004e3baa01add9c4 \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ size 388364
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+supported_archs noarch
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+depends_lib-append port:R-matrixStats \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ port:R-R.methodsS3 \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ port:R-R.oo \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ port:R-R.utils
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+depends_test-append port:R-princurve
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+test.run yes
</span><span style='display:block; white-space:pre;color:#808080;'>diff --git a/R/R-fastcpd/Portfile b/R/R-fastcpd/Portfile
</span><span style='display:block; white-space:pre;color:#808080;'>index 9f355c09323..a72cc3704bd 100644
</span><span style='display:block; white-space:pre;background:#e0e0ff;'>--- a/R/R-fastcpd/Portfile
</span><span style='display:block; white-space:pre;background:#e0e0ff;'>+++ b/R/R-fastcpd/Portfile
</span><span style='display:block; white-space:pre;background:#e0e0e0;'>@@ -3,7 +3,7 @@
</span> PortSystem 1.0
PortGroup R 1.0
<span style='display:block; white-space:pre;background:#ffe0e0;'>-R.setup cran doccstat fastcpd 0.13.1
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+R.setup cran doccstat fastcpd 0.14.0
</span> revision 0
categories-append math
maintainers {@barracuda156 gmail.com:vital.had} openmaintainer
<span style='display:block; white-space:pre;background:#e0e0e0;'>@@ -11,9 +11,9 @@ license GPL-3+
</span> description Fast change point detection via sequential gradient descent
long_description {*}${description}
homepage https://fastcpd.xingchi.li
<span style='display:block; white-space:pre;background:#ffe0e0;'>-checksums rmd160 039f50032ca12bac3842bb98f8a12b4adbac1382 \
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- sha256 8c65484fbd9c9c4d4fcd750ff8d9bbbbf5bfa3d9ab452d99709c6005fceb7a3a \
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- size 4046105
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+checksums rmd160 5a2e94d27cd9435f3cbbe12b8890e39a894910e8 \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ sha256 672ccef8f3a54fd7b2a724682e936e7cd158a803dc32b80b6bdda74b164115a4 \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ size 5302960
</span>
depends_lib-append port:R-fastglm \
port:R-forecast \
<span style='display:block; white-space:pre;background:#e0e0e0;'>@@ -21,11 +21,10 @@ depends_lib-append port:R-fastglm \
</span> port:R-progress \
port:R-Rcpp \
port:R-RcppArmadillo \
<span style='display:block; white-space:pre;background:#e0ffe0;'>+ port:R-RcppClock \
</span> port:R-testthat \
port:R-tseries
<span style='display:block; white-space:pre;background:#ffe0e0;'>-patchfiles patch-drop-missing-deps.diff
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-
</span> compilers.setup require_fortran
variant tests description "Enable testing" {
<span style='display:block; white-space:pre;background:#e0e0e0;'>@@ -45,6 +44,7 @@ variant tests description "Enable testing" {
</span> port:R-ggplot2 \
port:R-gridExtra \
port:R-InspectChangepoint \
<span style='display:block; white-space:pre;background:#e0ffe0;'>+ port:R-jointseg \
</span> port:R-knitr \
port:R-lubridate \
port:R-matrixStats \
<span style='display:block; white-space:pre;background:#e0e0e0;'>@@ -59,6 +59,7 @@ variant tests description "Enable testing" {
</span> port:R-stepR \
port:R-strucchange \
port:R-testthat \
<span style='display:block; white-space:pre;background:#e0ffe0;'>+ port:R-VARDetect \
</span> port:R-wbs \
port:R-xml2 \
port:R-zoo
<span style='display:block; white-space:pre;color:#808080;'>diff --git a/R/R-fastcpd/files/patch-drop-missing-deps.diff b/R/R-fastcpd/files/patch-drop-missing-deps.diff
</span>deleted file mode 100644
<span style='display:block; white-space:pre;color:#808080;'>index e3b1e4e8432..00000000000
</span><span style='display:block; white-space:pre;background:#e0e0ff;'>--- a/R/R-fastcpd/files/patch-drop-missing-deps.diff
</span><span style='display:block; white-space:pre;background:#e0e0ff;'>+++ /dev/null
</span><span style='display:block; white-space:pre;background:#e0e0e0;'>@@ -1,16 +0,0 @@
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>---- DESCRIPTION 2024-04-01 23:50:06.000000000 +0800
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+++ DESCRIPTION 2024-04-03 19:41:46.000000000 +0800
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-@@ -27,10 +27,10 @@
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- Imports: fastglm, forecast, glmnet, Matrix, methods, Rcpp (>= 0.11.0),
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- stats, tseries, utils
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- Suggests: abind, breakfast, changepoint, cpm, CptNonPar, ecp, fpop,
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-- ggplot2, gridExtra, InspectChangepoint, jointseg, knitr,
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+ ggplot2, gridExtra, InspectChangepoint, knitr,
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- lubridate, matrixStats, mcp, mockthat, mosum, mvtnorm, not,
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-- numDeriv, Rbeast, rmarkdown, segmented, stepR, strucchange,
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-- testthat (>= 3.0.0), VARDetect, wbs, xml2, zoo
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+ numDeriv, rmarkdown, segmented, stepR, strucchange,
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-+ testthat (>= 3.0.0), wbs, xml2, zoo
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- LinkingTo: progress, Rcpp, RcppArmadillo, testthat
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- VignetteBuilder: knitr
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- Config/testthat/edition: 3
</span><span style='display:block; white-space:pre;color:#808080;'>diff --git a/R/R-fastcpd/files/patch-tests-no-parallel.diff b/R/R-fastcpd/files/patch-tests-no-parallel.diff
</span><span style='display:block; white-space:pre;color:#808080;'>index ea5c084a380..91f481ad3e0 100644
</span><span style='display:block; white-space:pre;background:#e0e0ff;'>--- a/R/R-fastcpd/files/patch-tests-no-parallel.diff
</span><span style='display:block; white-space:pre;background:#e0e0ff;'>+++ b/R/R-fastcpd/files/patch-tests-no-parallel.diff
</span><span style='display:block; white-space:pre;background:#e0e0e0;'>@@ -5,6 +5,6 @@
</span> VignetteBuilder: knitr
Config/testthat/edition: 3
-Config/testthat/parallel: true
<span style='display:block; white-space:pre;background:#ffe0e0;'>- Config/testthat/start-first: vignettes-comparison-pelt, fastcpd_ts
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ Config/testthat/start-first: fastcpd_arima, fastcpd_ts
</span> Encoding: UTF-8
LazyData: true
<span style='display:block; white-space:pre;color:#808080;'>diff --git a/R/R-jointseg/Portfile b/R/R-jointseg/Portfile
</span>new file mode 100644
<span style='display:block; white-space:pre;color:#808080;'>index 00000000000..2f847b5974a
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>--- /dev/null
</span><span style='display:block; white-space:pre;background:#e0e0ff;'>+++ b/R/R-jointseg/Portfile
</span><span style='display:block; white-space:pre;background:#e0e0e0;'>@@ -0,0 +1,29 @@
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+# -*- coding: utf-8; mode: tcl; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- vim:fenc=utf-8:ft=tcl:et:sw=4:ts=4:sts=4
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+PortSystem 1.0
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+PortGroup R 1.0
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+R.setup cran mpierrejean jointseg 1.0.2
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+revision 0
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+maintainers nomaintainer
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+license LGPL-2.1+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+description Joint segmentation of multivariate (copy number) signals
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+long_description {*}${description}
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+homepage https://github.com/mpierrejean/jointseg
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+checksums rmd160 be4ea601c06695e71c5a179c6c8667875235ae45 \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ sha256 83241dc122ccdde065966b3094f47b52c75afcdd4fd719794d747030669f347e \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ size 946631
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+depends_lib-append port:R-acnr \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ port:R-DNAcopy \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ port:R-matrixStats
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+depends_test-append port:R-changepoint \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ port:R-digest \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ port:R-knitr \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ port:R-PSCBS \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ port:R-R.cache \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ port:R-rmarkdown \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ port:R-testthat
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+test.run yes
</span><span style='display:block; white-space:pre;color:#808080;'>diff --git a/R/R-picasso/Portfile b/R/R-picasso/Portfile
</span>new file mode 100644
<span style='display:block; white-space:pre;color:#808080;'>index 00000000000..7266bbc78d6
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>--- /dev/null
</span><span style='display:block; white-space:pre;background:#e0e0ff;'>+++ b/R/R-picasso/Portfile
</span><span style='display:block; white-space:pre;background:#e0e0e0;'>@@ -0,0 +1,22 @@
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+# -*- coding: utf-8; mode: tcl; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- vim:fenc=utf-8:ft=tcl:et:sw=4:ts=4:sts=4
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+PortSystem 1.0
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+PortGroup R 1.0
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+R.setup cran jiange picasso 1.3.1
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+revision 0
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+categories-append math
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+maintainers {@barracuda156 gmail.com:vital.had} openmaintainer
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+license GPL-3
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+description Pathwise calibrated sparse shooting algorithm
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+long_description {*}${description}
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+checksums rmd160 579a6c64bf527afbce55317a8188ff5cbb963d54 \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ sha256 6c94e7a6d188c1a9d9658b2729736b5194e04a898792028e8aee5cc911aafffc \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ size 2061720
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+# This port uses bundled eigen3 headers, which may fail on powerpc,
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+# if Altivec-related code is triggered. At the moment it is not.
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+# Solution would be to disable Altivec in the config header,
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+# until bundled eigen3 is updated. The bug is fixed in the upstream.
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+test.run yes
</span><span style='display:block; white-space:pre;color:#808080;'>diff --git a/R/R-sparsevar/Portfile b/R/R-sparsevar/Portfile
</span>new file mode 100644
<span style='display:block; white-space:pre;color:#808080;'>index 00000000000..063c3c72883
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>--- /dev/null
</span><span style='display:block; white-space:pre;background:#e0e0ff;'>+++ b/R/R-sparsevar/Portfile
</span><span style='display:block; white-space:pre;background:#e0e0e0;'>@@ -0,0 +1,32 @@
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+# -*- coding: utf-8; mode: tcl; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- vim:fenc=utf-8:ft=tcl:et:sw=4:ts=4:sts=4
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+PortSystem 1.0
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+PortGroup R 1.0
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+R.setup cran svazzole sparsevar 0.1.0
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+revision 0
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+categories-append math
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+maintainers {@barracuda156 gmail.com:vital.had} openmaintainer
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+license GPL-2
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+description Sparse VAR/VECM models estimation
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+long_description {*}${description}
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+homepage https://github.com/svazzole/sparsevar
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+checksums rmd160 5f04250581180887887658f45f4f5f8569697c5f \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ sha256 c7f30cf854be12ba54d49e80d161387b050068f13edb248a9f8c5502ea329ecd \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ size 1637116
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+supported_archs noarch
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+depends_lib-append port:R-corpcor \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ port:R-doParallel \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ port:R-ggplot2 \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ port:R-glmnet \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ port:R-mvtnorm \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ port:R-ncvreg \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ port:R-picasso \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ port:R-reshape2
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+depends_test-append port:R-knitr \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ port:R-rmarkdown \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ port:R-testthat
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+test.run yes
</span></pre><pre style='margin:0'>
</pre>