<pre style='margin:0'>
Herby Gillot (herbygillot) pushed a commit to branch master
in repository macports-ports.
</pre>
<p><a href="https://github.com/macports/macports-ports/commit/af759349640312d5f48ebfac39c3b7156e7053e5">https://github.com/macports/macports-ports/commit/af759349640312d5f48ebfac39c3b7156e7053e5</a></p>
<pre style="white-space: pre; background: #F8F8F8"><span style='display:block; white-space:pre;color:#808000;'>commit af759349640312d5f48ebfac39c3b7156e7053e5
</span>Author: barracuda156 <vital.had@gmail.com>
AuthorDate: Fri May 10 04:06:55 2024 +0800
<span style='display:block; white-space:pre;color:#404040;'> R-BSgenomeForge: update to 1.4.0
</span>---
R/R-BSgenomeForge/Portfile | 17 +++++++++++------
.../files/patch-no-BSgenome.Celegans.UCSC.ce2.diff | 11 +++++++++++
2 files changed, 22 insertions(+), 6 deletions(-)
<span style='display:block; white-space:pre;color:#808080;'>diff --git a/R/R-BSgenomeForge/Portfile b/R/R-BSgenomeForge/Portfile
</span><span style='display:block; white-space:pre;color:#808080;'>index 7e5f6061af2..eeb87ad0d7b 100644
</span><span style='display:block; white-space:pre;background:#e0e0ff;'>--- a/R/R-BSgenomeForge/Portfile
</span><span style='display:block; white-space:pre;background:#e0e0ff;'>+++ b/R/R-BSgenomeForge/Portfile
</span><span style='display:block; white-space:pre;background:#e0e0e0;'>@@ -3,32 +3,37 @@
</span> PortSystem 1.0
PortGroup R 1.0
<span style='display:block; white-space:pre;background:#ffe0e0;'>-R.setup bioconductor Bioconductor BSgenomeForge 1.2.3
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-revision 1
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+R.setup bioconductor Bioconductor BSgenomeForge 1.4.0
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+revision 0
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+categories-append bioconductor
</span> maintainers nomaintainer
license Artistic-2
description Forge BSgenome data packages
long_description {*}${description}
<span style='display:block; white-space:pre;background:#ffe0e0;'>-checksums rmd160 f1f6ca76a73409c9eba774b57823690f4923aade \
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- sha256 7b7d568e5bc64d7b29ad6d8e89bf3573561333fcf56b8b5869e2b9543be1b773 \
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- size 247526
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+checksums rmd160 c7858e0c59f5cfdcca78d15d3a4c5f71b538f77e \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ sha256 17b1075630b8ddedf3517d80b55a7746c053c9d9c47ec57cf8b2038969f20004 \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ size 459275
</span> supported_archs noarch
depends_lib-append port:R-Biobase \
port:R-BiocGenerics \
<span style='display:block; white-space:pre;background:#e0ffe0;'>+ port:R-BiocIO \
</span> port:R-Biostrings \
port:R-BSgenome \
port:R-GenomeInfoDb \
<span style='display:block; white-space:pre;background:#e0ffe0;'>+ port:R-GenomicRanges \
</span> port:R-IRanges \
port:R-rtracklayer \
port:R-S4Vectors
<span style='display:block; white-space:pre;background:#e0ffe0;'>+patchfiles patch-no-BSgenome.Celegans.UCSC.ce2.diff
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span> depends_test-append port:R-BiocStyle \
port:R-devtools \
port:R-GenomicFeatures \
<span style='display:block; white-space:pre;background:#ffe0e0;'>- port:R-GenomicRanges \
</span> port:R-knitr \
port:R-rmarkdown \
<span style='display:block; white-space:pre;background:#e0ffe0;'>+ port:R-Rsamtools \
</span> port:R-testthat
test.run yes
<span style='display:block; white-space:pre;color:#808080;'>diff --git a/R/R-BSgenomeForge/files/patch-no-BSgenome.Celegans.UCSC.ce2.diff b/R/R-BSgenomeForge/files/patch-no-BSgenome.Celegans.UCSC.ce2.diff
</span>new file mode 100644
<span style='display:block; white-space:pre;color:#808080;'>index 00000000000..a6799a1d05c
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>--- /dev/null
</span><span style='display:block; white-space:pre;background:#e0e0ff;'>+++ b/R/R-BSgenomeForge/files/patch-no-BSgenome.Celegans.UCSC.ce2.diff
</span><span style='display:block; white-space:pre;background:#e0e0e0;'>@@ -0,0 +1,11 @@
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+--- DESCRIPTION 2024-05-01 10:52:27.000000000 +0800
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>++++ DESCRIPTION 2024-05-10 03:54:28.000000000 +0800
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+@@ -23,7 +23,7 @@
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ Imports: utils, stats, Biobase, S4Vectors, GenomicRanges, BiocIO,
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ rtracklayer
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ Suggests: GenomicFeatures, Rsamtools, testthat, knitr, rmarkdown,
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+- BiocStyle, devtools, BSgenome.Celegans.UCSC.ce2
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>++ BiocStyle, devtools
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ VignetteBuilder: knitr
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ git_url: https://git.bioconductor.org/packages/BSgenomeForge
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ git_branch: RELEASE_3_19
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