<pre style='margin:0'>
Herby Gillot (herbygillot) pushed a commit to branch master
in repository macports-ports.

</pre>
<p><a href="https://github.com/macports/macports-ports/commit/c6fc537f52dd2658fc3db8bb993649f7a8644e96">https://github.com/macports/macports-ports/commit/c6fc537f52dd2658fc3db8bb993649f7a8644e96</a></p>
<pre style="white-space: pre; background: #F8F8F8"><span style='display:block; white-space:pre;color:#808000;'>commit c6fc537f52dd2658fc3db8bb993649f7a8644e96
</span>Author: Sergey Fedorov <barracuda@macos-powerpc.org>
AuthorDate: Thu Sep 19 19:18:25 2024 +0800

<span style='display:block; white-space:pre;color:#404040;'>    R-phangorn: update to 2.12.1, support testing
</span>---
 R/R-apex/Portfile      | 29 +++++++++++++++++++++++++++++
 R/R-ggseqlogo/Portfile | 26 ++++++++++++++++++++++++++
 R/R-phangorn/Portfile  | 27 ++++++++++++++++++++++-----
 3 files changed, 77 insertions(+), 5 deletions(-)

<span style='display:block; white-space:pre;color:#808080;'>diff --git a/R/R-apex/Portfile b/R/R-apex/Portfile
</span>new file mode 100644
<span style='display:block; white-space:pre;color:#808080;'>index 00000000000..26788591421
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>--- /dev/null
</span><span style='display:block; white-space:pre;background:#e0e0ff;'>+++ b/R/R-apex/Portfile
</span><span style='display:block; white-space:pre;background:#e0e0e0;'>@@ -0,0 +1,29 @@
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+# -*- coding: utf-8; mode: tcl; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- vim:fenc=utf-8:ft=tcl:et:sw=4:ts=4:sts=4
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+PortSystem          1.0
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+PortGroup           R 1.0
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+# GitHub version is archaic.
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+R.setup             cran thibautjombart apex 1.0.6
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+revision            0
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+categories-append   biology
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+platforms           {darwin any}
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+maintainers         nomaintainer
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+license             GPL-2+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+description         Phylogenetic methods for multiple gene data
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+long_description    {*}${description}
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+homepage            https://github.com/thibautjombart/apex
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+checksums           rmd160  29cb68f72b697738338ac59382bf6573c1676bf8 \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+                    sha256  07fa2ae64a40327553968caeec1ae763e9e4794c8c012cb73bd975a2cf0be5b3 \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+                    size    835479
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+supported_archs     noarch
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+depends_lib-append  port:R-adegenet \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+                    port:R-ape \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+                    port:R-phangorn
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+depends_test-append port:R-knitr \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+                    port:R-rmarkdown \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+                    port:R-testthat
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+test.run            yes
</span><span style='display:block; white-space:pre;color:#808080;'>diff --git a/R/R-ggseqlogo/Portfile b/R/R-ggseqlogo/Portfile
</span>new file mode 100644
<span style='display:block; white-space:pre;color:#808080;'>index 00000000000..c6e4f551c94
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>--- /dev/null
</span><span style='display:block; white-space:pre;background:#e0e0ff;'>+++ b/R/R-ggseqlogo/Portfile
</span><span style='display:block; white-space:pre;background:#e0e0e0;'>@@ -0,0 +1,26 @@
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+# -*- coding: utf-8; mode: tcl; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- vim:fenc=utf-8:ft=tcl:et:sw=4:ts=4:sts=4
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+PortSystem          1.0
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+PortGroup           R 1.0
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+R.setup             cran omarwagih ggseqlogo 0.2
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+revision            0
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+categories-append   graphics
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+platforms           {darwin any}
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+maintainers         nomaintainer
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+license             LGPL
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+description         R-ggplot2 extension for drawing publication-ready \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+                    sequence logos
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+long_description    {*}${description}
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+homepage            https://github.com/omarwagih/ggseqlogo
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+checksums           rmd160  998d25c55840d15599eb8acbfb215fdeda77b531 \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+                    sha256  1cbfd532032dd51316a1fa084bc8cdabe5517bc6ce7b3abafc0d94340e6736b7 \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+                    size    738059
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+supported_archs     noarch
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+depends_lib-append  port:R-ggplot2
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+depends_test-append port:R-knitr \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+                    port:R-rmarkdown
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+test.run            yes
</span><span style='display:block; white-space:pre;color:#808080;'>diff --git a/R/R-phangorn/Portfile b/R/R-phangorn/Portfile
</span><span style='display:block; white-space:pre;color:#808080;'>index de6999ba535..6a97ac11b48 100644
</span><span style='display:block; white-space:pre;background:#e0e0ff;'>--- a/R/R-phangorn/Portfile
</span><span style='display:block; white-space:pre;background:#e0e0ff;'>+++ b/R/R-phangorn/Portfile
</span><span style='display:block; white-space:pre;background:#e0e0e0;'>@@ -3,16 +3,17 @@
</span> PortSystem          1.0
 PortGroup           R 1.0
 
<span style='display:block; white-space:pre;background:#ffe0e0;'>-R.setup             cran KlausVigo phangorn 2.11.1
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-revision            2
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+R.setup             cran KlausVigo phangorn 2.12.1
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+revision            0
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+categories-append   biology
</span> maintainers         nomaintainer
 license             {GPL-2 GPL-3}
 description         Phylogenetic reconstruction and analysis
 long_description    {*}${description}
 homepage            https://klausvigo.github.io/phangorn
<span style='display:block; white-space:pre;background:#ffe0e0;'>-checksums           rmd160  53df4f94f27b7d06121827b3fb61a22022d9595a \
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-                    sha256  10096ecae03e118aa4dbc60d9866175fad4849c948e004cf10c3868e3feed420 \
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-                    size    1941820
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+checksums           rmd160  071be4d2c6bfdc31155be243959f0ce804929b22 \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+                    sha256  9dc59c7806b4ba5d2d168d0504fdd5a10778aa24ef2c7014af92c3a2f1fe9ee7 \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+                    size    1947043
</span> 
 depends_lib-append  port:R-ape \
                     port:R-digest \
<span style='display:block; white-space:pre;background:#e0e0e0;'>@@ -23,3 +24,19 @@ depends_lib-append  port:R-ape \
</span>                     port:R-Rcpp
 
 compilers.setup     require_fortran
<span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+depends_test-append port:R-apex \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+                    port:R-Biostrings \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+                    port:R-ggseqlogo \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+                    port:R-ggplot2 \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+                    port:R-knitr \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+                    port:R-magick \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+                    port:R-rgl \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+                    port:R-rmarkdown \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+                    port:R-seqinr \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+                    port:R-testthat \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+                    port:R-tinytest \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+                    port:R-vdiffr \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+                    port:R-xtable
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+test.run            yes
</span></pre><pre style='margin:0'>

</pre>