<pre style='margin:0'>
Herby Gillot (herbygillot) pushed a commit to branch master
in repository macports-ports.
</pre>
<p><a href="https://github.com/macports/macports-ports/commit/d0d8486e202661f8d1356fcdf43a378e826c32d8">https://github.com/macports/macports-ports/commit/d0d8486e202661f8d1356fcdf43a378e826c32d8</a></p>
<pre style="white-space: pre; background: #F8F8F8"><span style='display:block; white-space:pre;color:#808000;'>commit d0d8486e202661f8d1356fcdf43a378e826c32d8
</span>Author: Sergey Fedorov <barracuda@macos-powerpc.org>
AuthorDate: Sat Sep 21 18:50:48 2024 +0800
<span style='display:block; white-space:pre;color:#404040;'> R-bigsnpr: update to 1.12.15, support testing
</span>---
R/R-bigsnpr/Portfile | 33 ++++++++++++++++++++++++++++-----
R/R-gaston/Portfile | 25 +++++++++++++++++++++++++
R/R-mmapcharr/Portfile | 23 +++++++++++++++++++++++
R/R-pcadapt/Portfile | 35 +++++++++++++++++++++++++++++++++++
R/R-pinfsc50/Portfile | 19 +++++++++++++++++++
R/R-vcfR/Portfile | 42 ++++++++++++++++++++++++++++++++++++++++++
6 files changed, 172 insertions(+), 5 deletions(-)
<span style='display:block; white-space:pre;color:#808080;'>diff --git a/R/R-bigsnpr/Portfile b/R/R-bigsnpr/Portfile
</span><span style='display:block; white-space:pre;color:#808080;'>index 7d1a52925d4..b6c464b2a0d 100644
</span><span style='display:block; white-space:pre;background:#e0e0ff;'>--- a/R/R-bigsnpr/Portfile
</span><span style='display:block; white-space:pre;background:#e0e0ff;'>+++ b/R/R-bigsnpr/Portfile
</span><span style='display:block; white-space:pre;background:#e0e0e0;'>@@ -3,17 +3,17 @@
</span> PortSystem 1.0
PortGroup R 1.0
<span style='display:block; white-space:pre;background:#ffe0e0;'>-R.setup cran privefl bigsnpr 1.12.2
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>-revision 3
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+R.setup cran privefl bigsnpr 1.12.15
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+revision 0
</span> categories-append math
maintainers {@barracuda156 gmail.com:vital.had} openmaintainer
license GPL-3
description Analysis of massive SNP arrays
long_description {*}${description}
homepage https://privefl.github.io/bigsnpr
<span style='display:block; white-space:pre;background:#ffe0e0;'>-checksums rmd160 92fb61301eb0a0c0f8af42066a6ef890a972b598 \
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- sha256 443a5529ae2596eb3cf8f19760893b96beba4f12a4decbf6bea645db4d2187f6 \
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>- size 1060193
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+checksums rmd160 417477d3ff927cc3f08bc424ec5526d0d9c08f8a \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ sha256 f21c1cdeffea4de8af15442f632ac01565c00c5f8d4c7105f530aee6908943b3 \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ size 1064358
</span>
depends_lib-append port:R-bigassertr \
port:R-bigparallelr \
<span style='display:block; white-space:pre;background:#e0e0e0;'>@@ -34,3 +34,26 @@ depends_lib-append port:R-bigassertr \
</span> port:R-vctrs
compilers.setup require_fortran
<span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+depends_test-append port:R-bindata \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ port:R-covr \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ port:R-dbplyr \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ port:R-dplyr \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ port:R-gaston \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ port:R-glue \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ port:R-Hmisc \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ port:R-microbenchmark \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ port:R-pcadapt \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ port:R-quadprog \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ port:R-R.utils \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ port:R-RhpcBLASctl \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ port:R-rmutil \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ port:R-RSpectra \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ port:R-RSQLite \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ port:R-spelling \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ port:R-testthat \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ port:R-tibble \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ port:R-xgboost
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+# FIXME: https://github.com/privefl/bigsnpr/issues/515
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+test.run yes
</span><span style='display:block; white-space:pre;color:#808080;'>diff --git a/R/R-gaston/Portfile b/R/R-gaston/Portfile
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<span style='display:block; white-space:pre;color:#808080;'>index 00000000000..fbd42ce107e
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>--- /dev/null
</span><span style='display:block; white-space:pre;background:#e0e0ff;'>+++ b/R/R-gaston/Portfile
</span><span style='display:block; white-space:pre;background:#e0e0e0;'>@@ -0,0 +1,25 @@
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+# -*- coding: utf-8; mode: tcl; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- vim:fenc=utf-8:ft=tcl:et:sw=4:ts=4:sts=4
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+PortSystem 1.0
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+PortGroup R 1.0
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+R.setup cran herve.perdry gaston 1.6
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+revision 0
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+categories-append biology
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+maintainers nomaintainer
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+license GPL-3
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+description Genetic data handling and linear mixed models
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+long_description Genetic data handling (QC, GRM, LD, PCA) \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ and linear mixed models.
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+checksums rmd160 c67dbaea42a3aa6ebaf9097fb43a7bda03e5016c \
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</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+depends_lib-append port:R-Rcpp \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ port:R-RcppEigen \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ port:R-RcppParallel \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ port:zlib
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
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</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+test.run yes
</span><span style='display:block; white-space:pre;color:#808080;'>diff --git a/R/R-mmapcharr/Portfile b/R/R-mmapcharr/Portfile
</span>new file mode 100644
<span style='display:block; white-space:pre;color:#808080;'>index 00000000000..4f7b760ba8d
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>--- /dev/null
</span><span style='display:block; white-space:pre;background:#e0e0ff;'>+++ b/R/R-mmapcharr/Portfile
</span><span style='display:block; white-space:pre;background:#e0e0e0;'>@@ -0,0 +1,23 @@
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+# -*- coding: utf-8; mode: tcl; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- vim:fenc=utf-8:ft=tcl:et:sw=4:ts=4:sts=4
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+PortSystem 1.0
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+PortGroup R 1.0
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+R.setup cran privefl mmapcharr 0.3.0
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+revision 0
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+maintainers nomaintainer
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+license GPL-3
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+description Memory-map character files
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+long_description {*}${description}
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+homepage https://github.com/privefl/mmapcharr
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+checksums rmd160 e45fcb130292d62ac10acb76dae4e10eb375ef4e \
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</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+depends_lib-append port:R-Rcpp \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ port:R-rmio
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+depends_test-append port:R-covr \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ port:R-testthat
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+test.run yes
</span><span style='display:block; white-space:pre;color:#808080;'>diff --git a/R/R-pcadapt/Portfile b/R/R-pcadapt/Portfile
</span>new file mode 100644
<span style='display:block; white-space:pre;color:#808080;'>index 00000000000..ac8a3ff950c
</span><span style='display:block; white-space:pre;background:#ffe0e0;'>--- /dev/null
</span><span style='display:block; white-space:pre;background:#e0e0ff;'>+++ b/R/R-pcadapt/Portfile
</span><span style='display:block; white-space:pre;background:#e0e0e0;'>@@ -0,0 +1,35 @@
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+# -*- coding: utf-8; mode: tcl; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- vim:fenc=utf-8:ft=tcl:et:sw=4:ts=4:sts=4
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+PortSystem 1.0
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+PortGroup R 1.0
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+R.setup cran bcm-uga pcadapt 4.3.5
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+revision 0
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+categories-append math
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+maintainers {@barracuda156 gmail.com:vital.had} openmaintainer
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+license GPL-2+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+description Fast principal component analysis for outlier detection
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+long_description {*}${description}
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+homepage https://github.com/bcm-uga/pcadapt
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+checksums rmd160 5ead8c577a464fe8226fea0d9613d91294899a95 \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ sha256 3b61b18daafe091c13f13b49a39a9985f956e5710089d0f3a321f6887737d080 \
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</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
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</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ port:R-testthat \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ port:R-vcfR
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+test.run yes
</span><span style='display:block; white-space:pre;color:#808080;'>diff --git a/R/R-pinfsc50/Portfile b/R/R-pinfsc50/Portfile
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</span><span style='display:block; white-space:pre;background:#e0e0e0;'>@@ -0,0 +1,19 @@
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+# -*- coding: utf-8; mode: tcl; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- vim:fenc=utf-8:ft=tcl:et:sw=4:ts=4:sts=4
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
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</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+test.run yes
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</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ port:R-ggplot2 \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ port:R-knitr \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ port:R-reshape2 \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ port:R-rmarkdown \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ port:R-scales \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ port:R-testthat \
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+ port:R-tidyr
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+test.run yes
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+# Vignettes pull in a missing package.
</span><span style='display:block; white-space:pre;background:#e0ffe0;'>+test.args-append --ignore-vignettes
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