<html><head><style>body{font-family:Merriweather,Arial;font-size:13px}</style></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; line-break: after-white-space;"><div id="bloop_customfont" style="font-family:Merriweather,Arial;font-size:13px; color: rgba(51,51,51,1.0); margin: 0px; line-height: auto;">I reswitched back to the new versions of hdf5. I manually upgraded netcdf and netcdf-cxx and recompiled vtk, but I get the same error at the same point. </div><div id="bloop_customfont" style="font-family:Merriweather,Arial;font-size:13px; color: rgba(51,51,51,1.0); margin: 0px; line-height: auto;"><br></div><div id="bloop_customfont" style="font-family:Merriweather,Arial;font-size:13px; color: rgba(51,51,51,1.0); margin: 0px; line-height: auto;">I do not understand if it’s a problem with vtk or with macports… o.O </div><div id="bloop_customfont" style="font-family:Merriweather,Arial;font-size:13px; color: rgba(51,51,51,1.0); margin: 0px; line-height: auto;"><br></div><div id="bloop_customfont" style="font-family:Merriweather,Arial;font-size:13px; color: rgba(51,51,51,1.0); margin: 0px; line-height: auto;">I also tried with the new netcdf-cxx4 port, but I get the same error unfortunately. </div> <br> <div id="bloop_sign_1542273000565029120" class="bloop_sign">
<title></title>
<pre> _
-. .´ |∞∞∞∞
', ; |∞∞∞∞∞∞
˜˜ |∞∞∞∞∞∞∞∞∞ RdB
,., |∞∞∞∞∞∞
.' '. |∞∞∞∞
-' `’
https://rdb.is
</pre>
</div> <br><p class="airmail_on">On 15 novembre 2018 a 09:14:37, Ruben Di Battista (<a href="mailto:rubendibattista@gmail.com">rubendibattista@gmail.com</a>) scritto:</p> <blockquote type="cite" class="clean_bq"><span><div style="word-wrap: break-word; -webkit-nbsp-mode: space; line-break: after-white-space;"><div></div><div>
<title></title>
<div id="bloop_customfont" style="font-family:Merriweather,Arial;font-size:13px; color: rgba(51,51,51,1.0); margin: 0px; line-height: auto;">
Hello Ryan, </div>
<div id="bloop_customfont" style="font-family:Merriweather,Arial;font-size:13px; color: rgba(51,51,51,1.0); margin: 0px; line-height: auto;">
<br></div>
<div id="bloop_customfont" style="font-family:Merriweather,Arial;font-size:13px; color: rgba(51,51,51,1.0); margin: 0px; line-height: auto;">
Thanks for replying. I think I did my self update (when having a
file:// local ports repository on the sources.conf, is there
something to take care in addition to standard `sudo port self
update`? Because I had the impression that sometimes I was not
getting the updates properly…).</div>
<div id="bloop_customfont" style="font-family:Merriweather,Arial;font-size:13px; color: rgba(51,51,51,1.0); margin: 0px; line-height: auto;">
<br></div>
<div id="bloop_customfont" style="font-family:Merriweather,Arial;font-size:13px; color: rgba(51,51,51,1.0); margin: 0px; line-height: auto;">
Indeed, however, I activated the old versions of hdf5 and
netcdf-cxx, and the build proceeds correctly as expected. To me
this looks related to hdf5/netcdf-cxx port… :/</div>
<div id="bloop_customfont" style="font-family:Merriweather,Arial;font-size:13px; color: rgba(51,51,51,1.0); margin: 0px; line-height: auto;">
<br></div>
<div id="bloop_customfont" style="font-family:Merriweather,Arial;font-size:13px; color: rgba(51,51,51,1.0); margin: 0px; line-height: auto;">
I’ll try to investigate a bit more. </div>
<br>
<div id="bloop_sign_1542269502348579840" class="bloop_sign">
<pre> _
-. .´ |∞∞∞∞
', ; |∞∞∞∞∞∞
˜˜ |∞∞∞∞∞∞∞∞∞ RdB
,., |∞∞∞∞∞∞
.' '. |∞∞∞∞
-' `’
https://rdb.is
</pre></div>
<br>
<p class="airmail_on">On 15 novembre 2018 a 04:33:19, Ryan Schmidt
(<a href="mailto:ryandesign@macports.org">ryandesign@macports.org</a>)
scritto:</p>
<blockquote type="cite" class="clean_bq">
<div>
<div><span><br>
<br>
On Nov 14, 2018, at 20:28, Ruben Di Battista wrote:<br>
<br>
> Hello,<br>
><br>
> Recently on Macports hdf5 (4.3.0) and netcdf packages were
updated. Recompiling vtk with xdmf support (and python27 bindings)
returns me this error:<br>
><br>
> :info:build [ 78%] Python Wrapping - generating
vtkFillHolesFilterPython.cxx<br>
> :info:build cd
/opt/local/var/macports/build/_Users_***_git_macports-ports_graphics_vtk/vtk/work/build/Wrapping/Python
&& ../../bin/vtkWrapPython-8.1
@/opt/local/var/macports/build/_Users_***_git_macports-ports_graphics_vtk/vtk/work/build/Wrapping/Python/vtkFiltersModelingPython.Release.args
-o
/opt/local/var/macports/build/_Users_***_git_macports-ports_graphics_vtk/vtk/work/build/Wrapping/Python/vtkFillHolesFilterPython.cxx
/opt/local/var/macports/build/_Users_***_git_macports-ports_graphics_vtk/vtk/work/VTK-8.1.1/Filters/Modeling/vtkFillHolesFilter.h<br>
> :info:build ld: file not found:
/opt/local/lib/libhdf5.101.dylib for architecture x86_64<br>
><br>
> Checking in the library folder (/opt/local/lib) I have not
`libhdf5.101.dylib`, but `libhdf5.103.dylib`. Where in the VTK’s
CMakeFiles.txt the actual HDF5 library version gets computed?<br>
><br>
> Can you give me an hint on how I can try to fix this linking
error? Seems to be related to some “leftover” of the previous
installation maybe… I tried a port clean on vtk and hdf5 but I keep
getting this error…<br>
<br>
Make sure you have run "sudo port selfupdate" and "sudo port
upgrade outdated" first.<br>
<br>
When I tried to reproduce this problem on my system, I did get the
same "file not found: /opt/local/lib/libhdf5.101.dylib" error, but
when building netcdf-cxx. The problem was that MacPorts did not
automatically upgrade netcdf first; the solution was upgrading
netcdf manually. I don't know why MacPorts didn't do that; it
should have, since it is listed as a dependency of
netcdf-cxx.<br>
<br></span></div>
</div>
</blockquote>
</div></div></span></blockquote></body></html>