[MacPorts] #18246: linker error in openmpi port
MacPorts
noreply at macports.org
Wed Jan 28 03:04:38 PST 2009
#18246: linker error in openmpi port
-------------------------------+--------------------------------------------
Reporter: gamperl@… | Owner: macports-tickets@…
Type: defect | Status: new
Priority: Normal | Milestone: Port Bugs
Component: ports | Version: 1.7.0
Keywords: | Port: openmpi
-------------------------------+--------------------------------------------
Updating the openmpi results in the following error:
{{{
---> Building openmpi
Error: Target org.macports.build returned: shell command " cd
"/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_openmpi/work/build"
&& make all " returned error 2
Command output: Making all in mca/rmaps/round_robin
make[2]: Nothing to be done for `all'.
Making all in mca/rmaps/seq
make[2]: Nothing to be done for `all'.
Making all in mca/rml/oob
make[2]: Nothing to be done for `all'.
Making all in mca/routed/binomial
make[2]: Nothing to be done for `all'.
Making all in mca/routed/direct
make[2]: Nothing to be done for `all'.
Making all in mca/routed/linear
make[2]: Nothing to be done for `all'.
Making all in tools/orte-checkpoint
make[2]: Nothing to be done for `all'.
Making all in tools/orte-clean
make[2]: Nothing to be done for `all'.
Making all in tools/orte-iof
/bin/sh ../../../libtool --tag=CC --mode=link /usr/bin/gcc-4.0 -DNDEBUG
-O2 -finline-functions -fno-strict-aliasing -fvisibility=hidden -export-
dynamic -L/opt/local/lib -o orte-iof orte-iof.o ../../../orte/libopen-
rte.la -lutil
libtool: link: /usr/bin/gcc-4.0 -DNDEBUG -O2 -finline-functions -fno-
strict-aliasing -fvisibility=hidden -o orte-iof orte-iof.o
-L/opt/local/lib ../../../orte/.libs/libopen-rte.a
/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_openmpi/work/build/opal/.libs
/libopen-pal.a -lutil
Undefined symbols:
"_orte_iof", referenced from:
_orte_iof$non_lazy_ptr in orte-iof.o
"_orte_routed", referenced from:
_orte_routed$non_lazy_ptr in libopen-rte.a(hnp_contact.o)
_orte_routed$non_lazy_ptr in libopen-rte.a(rml_base_contact.o)
ld: symbol(s) not found
collect2: ld returned 1 exit status
make[2]: *** [orte-iof] Error 1
make[1]: *** [all-recursive] Error 1
make: *** [all-recursive] Error 1
Error: Unable to upgrade port: 1
---> Activating hdf5 @1.6.8_0
Error: Activating hdf5 @1.6.8_0 failed: Image error: /opt/local/bin/gif2h5
is being used by the active hdf5-18 port. Please deactivate this port
first, or use the -f flag to force the activation.
---> Activating hdf5 @1.6.8_0
Error: Activating hdf5 @1.6.8_0 failed: Image error: /opt/local/bin/gif2h5
is being used by the active hdf5-18 port. Please deactivate this port
first, or use the -f flag to force the activation.
---> Building openmpi
Error: Target org.macports.build returned: shell command " cd
"/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_openmpi/work/build"
&& make all " returned error 2
Command output: Making all in mca/rmaps/round_robin
make[2]: Nothing to be done for `all'.
Making all in mca/rmaps/seq
make[2]: Nothing to be done for `all'.
Making all in mca/rml/oob
make[2]: Nothing to be done for `all'.
Making all in mca/routed/binomial
make[2]: Nothing to be done for `all'.
Making all in mca/routed/direct
make[2]: Nothing to be done for `all'.
Making all in mca/routed/linear
make[2]: Nothing to be done for `all'.
Making all in tools/orte-checkpoint
make[2]: Nothing to be done for `all'.
Making all in tools/orte-clean
make[2]: Nothing to be done for `all'.
Making all in tools/orte-iof
/bin/sh ../../../libtool --tag=CC --mode=link /usr/bin/gcc-4.0 -DNDEBUG
-O2 -finline-functions -fno-strict-aliasing -fvisibility=hidden -export-
dynamic -L/opt/local/lib -o orte-iof orte-iof.o ../../../orte/libopen-
rte.la -lutil
libtool: link: /usr/bin/gcc-4.0 -DNDEBUG -O2 -finline-functions -fno-
strict-aliasing -fvisibility=hidden -o orte-iof orte-iof.o
-L/opt/local/lib ../../../orte/.libs/libopen-rte.a
/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_openmpi/work/build/opal/.libs
/libopen-pal.a -lutil
Undefined symbols:
"_orte_iof", referenced from:
_orte_iof$non_lazy_ptr in orte-iof.o
"_orte_routed", referenced from:
_orte_routed$non_lazy_ptr in libopen-rte.a(hnp_contact.o)
_orte_routed$non_lazy_ptr in libopen-rte.a(rml_base_contact.o)
ld: symbol(s) not found
collect2: ld returned 1 exit status
make[2]: *** [orte-iof] Error 1
make[1]: *** [all-recursive] Error 1
make: *** [all-recursive] Error 1
}}}
--
Ticket URL: <http://trac.macports.org/ticket/18246>
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