[MacPorts] #30342: Update ARB for Lion (OS X 10.7) and Xcode 4
MacPorts
noreply at macports.org
Tue Jul 26 18:27:50 PDT 2011
#30342: Update ARB for Lion (OS X 10.7) and Xcode 4
--------------------------------------+-------------------------------------
Reporter: matt.cottrell@… | Owner: macports-tickets@…
Type: update | Status: new
Priority: Normal | Milestone:
Component: ports | Version: 2.0.0
Keywords: lion haspatch maintainer | Port: arb
--------------------------------------+-------------------------------------
Comment(by matt.cottrell@…):
Replying to [comment:10 ryandesign@…]:
> It does not build on Snow Leopard with Xcode 3.2.6. I'll attach the
complete log.
>
> Also, there are some reinplaces that (now?) do nothing that perhaps need
to be revised or removed.
That is very strange. The proposed changes build ARB for me on Snow
Leopard with Xcode 3.2.6. Fortunately, I do have another machine running
that set up.
The error you are getting is nothing I've seen before and nowhere near
where we are patching.
{{{
:info:build -------------------- Checking bin/arb_ntree
:info:build Target 'bin/arb_ntree' not found
:info:build -> rebuilding bin/arb_ntree (Wed Dec 31 17:59:59 1969)
:info:build Link bin/arb_ntree
:info:build /usr/bin/g++-4.2 -arch x86_64 -o bin/arb_ntree
-L/opt/local/var/macports/build/_Users_rschmidt_macports_dports_science_arb/work/arbsrc_6779/LIBLINK
PROBE_COM/client.a ARB_GDE/ARB_GDE.a AWTC/AWTC.a AWTI/AWTI.a GENOM/GENOM.a
GENOM_IMPORT/GENOM_IMPORT.a MERGE/MERGE.a MULTI_PROBE/MULTI_PROBE.a
NTREE/NTREE.a PRIMER_DESIGN/PRIMER_DESIGN.a PROBE_DESIGN/PROBE_DESIGN.a
SEQ_QUALITY/SEQ_QUALITY.a SERVERCNTRL/SERVERCNTRL.a SL/AW_NAME/AW_NAME.a
SL/DB_SCANNER/DB_SCANNER.a SL/FILE_BUFFER/FILE_BUFFER.a SL/HELIX/HELIX.a
SL/REGEXPR/REGEXPR.a SL/TREE_READ/TREE_READ.a SL/TREE_WRITE/TREE_WRITE.a
STAT/STAT.a XML/XML.a -lARBDB -lstdc++ -lAW -lAWT -L/opt/local/lib -lXm
-lpng -lz -lXt -lX11 -lXext -lXp -lXmu -lXi -lGLU -lGL
-Wl,-dylib_file,/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib:/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib
:info:build ld: in AWTC/AWTC.a, section not found for address 0x0000689E
:info:build collect2: ld returned 1 exit status
:info:build make[2]: *** [bin/arb_ntree] Error 1
:info:build make[1]: *** [arb] Error 2
:info:build make: *** [all] Error 2
}}}
It's such a strange error that I suspect a corrupted source file. I'm
reaching here because I cannot reproduce your failure. Can you download a
fresh copy of the source and try again?
We'll deal with the reinplaces after all is well with the build. Thanks
for the heads up.
--
Ticket URL: <https://trac.macports.org/ticket/30342#comment:11>
MacPorts <http://www.macports.org/>
Ports system for Mac OS
More information about the macports-tickets
mailing list