[MacPorts] #68548: SuiteSparse_CHOLMOD @3.0.14_1+openblas build fails (was: Installation fails)
MacPorts
noreply at macports.org
Wed Oct 25 10:10:33 UTC 2023
#68548: SuiteSparse_CHOLMOD @3.0.14_1+openblas build fails
----------------------------------+---------------------------------
Reporter: occasionalreporter | Owner: MarcusCalhoun-Lopez
Type: defect | Status: assigned
Priority: Normal | Milestone:
Component: ports | Version:
Resolution: | Keywords:
Port: SuiteSparse_CHOLMOD |
----------------------------------+---------------------------------
Changes (by jmroot):
* status: new => assigned
* owner: (none) => MarcusCalhoun-Lopez
Old description:
> While executing the command:
> sudo port install SuiteSparse_CHOLMOD
> I get the following output:
> ---> Computing dependencies for SuiteSparse_CHOLMOD
> ---> Fetching archive for SuiteSparse_CHOLMOD
> ---> Attempting to fetch
> SuiteSparse_CHOLMOD-3.0.14_1+openblas.darwin_23.arm64.tbz2 from
> https://packages.macports.org/SuiteSparse_CHOLMOD
> ---> Attempting to fetch
> SuiteSparse_CHOLMOD-3.0.14_1+openblas.darwin_23.arm64.tbz2 from
> https://nue.de.packages.macports.org/SuiteSparse_CHOLMOD
> ---> Attempting to fetch
> SuiteSparse_CHOLMOD-3.0.14_1+openblas.darwin_23.arm64.tbz2 from
> https://fra.de.packages.macports.org/SuiteSparse_CHOLMOD
> ---> Building SuiteSparse_CHOLMOD
> Error: Failed to build SuiteSparse_CHOLMOD: command execution failed
> Error: See
> /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_SuiteSparse/SuiteSparse_CHOLMOD/main.log
> for details.
> Error: Follow https://guide.macports.org/#project.tickets if you believe
> there is a bug.
> Error: Processing of port SuiteSparse_CHOLMOD failed
>
> Looking at the end of the log file, this is the relevant information:
>
> :info:build
> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_SuiteSparse/SuiteSparse_CHOLMOD/work/compwrap/cxx/usr/bin/clang++
> -L/opt/local/lib -Wl,-headerpad_max_install_names
> -Wl,-rpath,/opt/local/lib/libgcc
> -Wl,-syslibroot,/Library/Developer/CommandLineTools/SDKs/MacOSX14.sdk
> -arch arm64
> -L/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_SuiteSparse/SuiteSparse_CHOLMOD/work/SuiteSparse-5.9.0/lib
> -L/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_SuiteSparse/SuiteSparse_CHOLMOD/work/SuiteSparse-5.9.0/lib
> -dynamiclib -compatibility_version 3 -current_version 3.0.14
> -Wl,-install_name -Wl,/opt/local/lib/libcholmod.3.dylib -shared
> -undefined dynamic_lookup cholmod_aat.o cholmod_add.o cholmod_band.o
> cholmod_change_factor.o cholmod_common.o cholmod_complex.o cholmod_copy.o
> cholmod_dense.o cholmod_error.o cholmod_factor.o cholmod_memory.o
> cholmod_sparse.o cholmod_transpose.o cholmod_triplet.o cholmod_version.o
> cholmod_check.o cholmod_read.o cholmod_write.o cholmod_amd.o
> cholmod_analyze.o cholmod_colamd.o cholmod_etree.o cholmod_factorize.o
> cholmod_postorder.o cholmod_rcond.o cholmod_resymbol.o
> cholmod_rowcolcounts.o cholmod_rowfac.o cholmod_solve.o cholmod_spsolve.o
> cholmod_drop.o cholmod_horzcat.o cholmod_norm.o cholmod_scale.o
> cholmod_sdmult.o cholmod_ssmult.o cholmod_submatrix.o cholmod_vertcat.o
> cholmod_symmetry.o cholmod_rowadd.o cholmod_rowdel.o cholmod_updown.o
> cholmod_super_numeric.o cholmod_super_solve.o cholmod_super_symbolic.o
> cholmod_ccolamd.o cholmod_csymamd.o cholmod_metis.o cholmod_nesdis.o
> cholmod_camd.o cholmod_l_aat.o cholmod_l_add.o cholmod_l_band.o
> cholmod_l_change_factor.o cholmod_l_common.o cholmod_l_complex.o
> cholmod_l_copy.o cholmod_l_dense.o cholmod_l_error.o cholmod_l_factor.o
> cholmod_l_memory.o cholmod_l_sparse.o cholmod_l_transpose.o
> cholmod_l_triplet.o cholmod_l_version.o cholmod_l_check.o
> cholmod_l_read.o cholmod_l_write.o cholmod_l_amd.o cholmod_l_analyze.o
> cholmod_l_colamd.o cholmod_l_etree.o cholmod_l_factorize.o
> cholmod_l_postorder.o cholmod_l_rcond.o cholmod_l_resymbol.o
> cholmod_l_rowcolcounts.o cholmod_l_rowfac.o cholmod_l_solve.o
> cholmod_l_spsolve.o cholmod_l_drop.o cholmod_l_horzcat.o cholmod_l_norm.o
> cholmod_l_scale.o cholmod_l_sdmult.o cholmod_l_ssmult.o
> cholmod_l_submatrix.o cholmod_l_vertcat.o cholmod_l_symmetry.o
> cholmod_l_rowadd.o cholmod_l_rowdel.o cholmod_l_updown.o
> cholmod_l_super_numeric.o cholmod_l_super_solve.o
> cholmod_l_super_symbolic.o cholmod_l_ccolamd.o cholmod_l_csymamd.o
> cholmod_l_metis.o cholmod_l_nesdis.o cholmod_l_camd.o -o
> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_SuiteSparse/SuiteSparse_CHOLMOD/work/SuiteSparse-5.9.0/lib/libcholmod.3.0.14.dylib
> -lm -lamd -lcolamd -lsuitesparseconfig -lccolamd -lcamd -L/opt/local/lib
> -lmetis -L/opt/local/lib -lopenblas -L/opt/local/lib -lopenblas
> :info:build ld: warning: ignoring duplicate libraries: '-lopenblas'
> :info:build ld: duplicate LC_RPATH '/opt/local/lib/libgcc' in
> '/opt/local/lib/libopenblas-r1.dylib'
> :info:build clang: error: linker command failed with exit code 1 (use -v
> to see invocation)
> :info:build make[1]: ***
> [/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_SuiteSparse/SuiteSparse_CHOLMOD/work/SuiteSparse-5.9.0/lib/libcholmod.3.0.14.dylib]
> Error 1
> :info:build make[1]: Leaving directory
> `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_SuiteSparse/SuiteSparse_CHOLMOD/work/SuiteSparse-5.9.0/CHOLMOD/Lib'
> :info:build make: *** [library] Error 2
> :info:build make: Leaving directory
> `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_SuiteSparse/SuiteSparse_CHOLMOD/work/SuiteSparse-5.9.0/CHOLMOD/Lib'
> :info:build Command failed: cd
> "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_SuiteSparse/SuiteSparse_CHOLMOD/work/SuiteSparse-5.9.0/CHOLMOD/Lib"
> && /usr/bin/make -j1 -w default MY_METIS_LIB="-L/opt/local/lib -lmetis"
> MY_METIS_INC="/opt/local/include" MACPORTS_PREFIX="/opt/local"
> OPTIMIZATION="-O3" AUTOCC=no BLAS="-L/opt/local/lib -lopenblas"
> LAPACK="-L/opt/local/lib -lopenblas" TARGET_ARCH="-arch arm64"
> CC="/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_SuiteSparse/SuiteSparse_CHOLMOD/work/compwrap/cc/usr/bin/clang"
> CXX="/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_SuiteSparse/SuiteSparse_CHOLMOD/work/compwrap/cxx/usr/bin/clang++"
> OBJC="/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_SuiteSparse/SuiteSparse_CHOLMOD/work/compwrap/objc/usr/bin/clang"
> OBJCXX="/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_SuiteSparse/SuiteSparse_CHOLMOD/work/compwrap/objcxx/usr/bin/clang++"
> :info:build Exit code: 2
> :error:build Failed to build SuiteSparse_CHOLMOD: command execution
> failed
> :debug:build Error code: CHILDSTATUS 64602 2
> :debug:build Backtrace: command execution failed
> :debug:build while executing
> :debug:build "system {*}$notty {*}$callback {*}$nice $fullcmdstring"
> :debug:build invoked from within
> :debug:build "command_exec -callback
> portprogress::target_progress_callback build"
> :debug:build (procedure "portbuild::build_main" line 8)
> :debug:build invoked from within
> :debug:build "$procedure $targetname"
> :error:build See
> /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_SuiteSparse/SuiteSparse_CHOLMOD/main.log
> for details.
New description:
While executing the command:
sudo port install SuiteSparse_CHOLMOD
I get the following output:
{{{
---> Computing dependencies for SuiteSparse_CHOLMOD
---> Fetching archive for SuiteSparse_CHOLMOD
---> Attempting to fetch
SuiteSparse_CHOLMOD-3.0.14_1+openblas.darwin_23.arm64.tbz2 from
https://packages.macports.org/SuiteSparse_CHOLMOD
---> Attempting to fetch
SuiteSparse_CHOLMOD-3.0.14_1+openblas.darwin_23.arm64.tbz2 from
https://nue.de.packages.macports.org/SuiteSparse_CHOLMOD
---> Attempting to fetch
SuiteSparse_CHOLMOD-3.0.14_1+openblas.darwin_23.arm64.tbz2 from
https://fra.de.packages.macports.org/SuiteSparse_CHOLMOD
---> Building SuiteSparse_CHOLMOD
Error: Failed to build SuiteSparse_CHOLMOD: command execution failed
Error: See
/opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_SuiteSparse/SuiteSparse_CHOLMOD/main.log
for details.
Error: Follow https://guide.macports.org/#project.tickets if you believe
there is a bug.
Error: Processing of port SuiteSparse_CHOLMOD failed
}}}
Looking at the end of the log file, this is the relevant information:
{{{
:info:build
/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_SuiteSparse/SuiteSparse_CHOLMOD/work/compwrap/cxx/usr/bin/clang++
-L/opt/local/lib -Wl,-headerpad_max_install_names
-Wl,-rpath,/opt/local/lib/libgcc
-Wl,-syslibroot,/Library/Developer/CommandLineTools/SDKs/MacOSX14.sdk
-arch arm64
-L/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_SuiteSparse/SuiteSparse_CHOLMOD/work/SuiteSparse-5.9.0/lib
-L/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_SuiteSparse/SuiteSparse_CHOLMOD/work/SuiteSparse-5.9.0/lib
-dynamiclib -compatibility_version 3 -current_version 3.0.14
-Wl,-install_name -Wl,/opt/local/lib/libcholmod.3.dylib -shared -undefined
dynamic_lookup cholmod_aat.o cholmod_add.o cholmod_band.o
cholmod_change_factor.o cholmod_common.o cholmod_complex.o cholmod_copy.o
cholmod_dense.o cholmod_error.o cholmod_factor.o cholmod_memory.o
cholmod_sparse.o cholmod_transpose.o cholmod_triplet.o cholmod_version.o
cholmod_check.o cholmod_read.o cholmod_write.o cholmod_amd.o
cholmod_analyze.o cholmod_colamd.o cholmod_etree.o cholmod_factorize.o
cholmod_postorder.o cholmod_rcond.o cholmod_resymbol.o
cholmod_rowcolcounts.o cholmod_rowfac.o cholmod_solve.o cholmod_spsolve.o
cholmod_drop.o cholmod_horzcat.o cholmod_norm.o cholmod_scale.o
cholmod_sdmult.o cholmod_ssmult.o cholmod_submatrix.o cholmod_vertcat.o
cholmod_symmetry.o cholmod_rowadd.o cholmod_rowdel.o cholmod_updown.o
cholmod_super_numeric.o cholmod_super_solve.o cholmod_super_symbolic.o
cholmod_ccolamd.o cholmod_csymamd.o cholmod_metis.o cholmod_nesdis.o
cholmod_camd.o cholmod_l_aat.o cholmod_l_add.o cholmod_l_band.o
cholmod_l_change_factor.o cholmod_l_common.o cholmod_l_complex.o
cholmod_l_copy.o cholmod_l_dense.o cholmod_l_error.o cholmod_l_factor.o
cholmod_l_memory.o cholmod_l_sparse.o cholmod_l_transpose.o
cholmod_l_triplet.o cholmod_l_version.o cholmod_l_check.o cholmod_l_read.o
cholmod_l_write.o cholmod_l_amd.o cholmod_l_analyze.o cholmod_l_colamd.o
cholmod_l_etree.o cholmod_l_factorize.o cholmod_l_postorder.o
cholmod_l_rcond.o cholmod_l_resymbol.o cholmod_l_rowcolcounts.o
cholmod_l_rowfac.o cholmod_l_solve.o cholmod_l_spsolve.o cholmod_l_drop.o
cholmod_l_horzcat.o cholmod_l_norm.o cholmod_l_scale.o cholmod_l_sdmult.o
cholmod_l_ssmult.o cholmod_l_submatrix.o cholmod_l_vertcat.o
cholmod_l_symmetry.o cholmod_l_rowadd.o cholmod_l_rowdel.o
cholmod_l_updown.o cholmod_l_super_numeric.o cholmod_l_super_solve.o
cholmod_l_super_symbolic.o cholmod_l_ccolamd.o cholmod_l_csymamd.o
cholmod_l_metis.o cholmod_l_nesdis.o cholmod_l_camd.o -o
/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_SuiteSparse/SuiteSparse_CHOLMOD/work/SuiteSparse-5.9.0/lib/libcholmod.3.0.14.dylib
-lm -lamd -lcolamd -lsuitesparseconfig -lccolamd -lcamd -L/opt/local/lib
-lmetis -L/opt/local/lib -lopenblas -L/opt/local/lib -lopenblas
:info:build ld: warning: ignoring duplicate libraries: '-lopenblas'
:info:build ld: duplicate LC_RPATH '/opt/local/lib/libgcc' in
'/opt/local/lib/libopenblas-r1.dylib'
:info:build clang: error: linker command failed with exit code 1 (use -v
to see invocation)
:info:build make[1]: ***
[/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_SuiteSparse/SuiteSparse_CHOLMOD/work/SuiteSparse-5.9.0/lib/libcholmod.3.0.14.dylib]
Error 1
:info:build make[1]: Leaving directory
`/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_SuiteSparse/SuiteSparse_CHOLMOD/work/SuiteSparse-5.9.0/CHOLMOD/Lib'
:info:build make: *** [library] Error 2
:info:build make: Leaving directory
`/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_SuiteSparse/SuiteSparse_CHOLMOD/work/SuiteSparse-5.9.0/CHOLMOD/Lib'
:info:build Command failed: cd
"/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_SuiteSparse/SuiteSparse_CHOLMOD/work/SuiteSparse-5.9.0/CHOLMOD/Lib"
&& /usr/bin/make -j1 -w default MY_METIS_LIB="-L/opt/local/lib -lmetis"
MY_METIS_INC="/opt/local/include" MACPORTS_PREFIX="/opt/local"
OPTIMIZATION="-O3" AUTOCC=no BLAS="-L/opt/local/lib -lopenblas"
LAPACK="-L/opt/local/lib -lopenblas" TARGET_ARCH="-arch arm64"
CC="/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_SuiteSparse/SuiteSparse_CHOLMOD/work/compwrap/cc/usr/bin/clang"
CXX="/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_SuiteSparse/SuiteSparse_CHOLMOD/work/compwrap/cxx/usr/bin/clang++"
OBJC="/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_SuiteSparse/SuiteSparse_CHOLMOD/work/compwrap/objc/usr/bin/clang"
OBJCXX="/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_SuiteSparse/SuiteSparse_CHOLMOD/work/compwrap/objcxx/usr/bin/clang++"
:info:build Exit code: 2
:error:build Failed to build SuiteSparse_CHOLMOD: command execution failed
:debug:build Error code: CHILDSTATUS 64602 2
:debug:build Backtrace: command execution failed
:debug:build while executing
:debug:build "system {*}$notty {*}$callback {*}$nice $fullcmdstring"
:debug:build invoked from within
:debug:build "command_exec -callback
portprogress::target_progress_callback build"
:debug:build (procedure "portbuild::build_main" line 8)
:debug:build invoked from within
:debug:build "$procedure $targetname"
:error:build See
/opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_SuiteSparse/SuiteSparse_CHOLMOD/main.log
for details.
}}}
--
--
Ticket URL: <https://trac.macports.org/ticket/68548#comment:1>
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