[MacPorts] #68162: R-tiledb @0.21.0 broken on macOS 12 and earlier when built with Clang

MacPorts noreply at macports.org
Fri Sep 15 14:46:27 UTC 2023


#68162: R-tiledb @0.21.0 broken on macOS 12 and earlier when built with Clang
---------------------------+--------------------
  Reporter:  barracuda156  |      Owner:  (none)
      Type:  defect        |     Status:  new
  Priority:  Normal        |  Milestone:
 Component:  ports         |    Version:  2.8.1
Resolution:                |   Keywords:
      Port:  R-tiledb      |
---------------------------+--------------------

Comment (by barracuda156):

 At the same time, strangely, on CI it built fine:
 {{{
   /opt/local/bin/clang++-mp-15 -std=gnu++17 -dynamiclib
 -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module
 -multiply_defined suppress
 -L/opt/local/Library/Frameworks/R.framework/Resources/lib -L/opt/local/lib
 -Wl,-headerpad_max_install_names -Wl,-rpath,/opt/local/lib/libgcc
 -Wl,-syslibroot,/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk
 -arch x86_64 -o tiledb.so RcppExports.o arrowio.o batched.o
 column_buffer.o deprecation.o durations.o libtiledb.o nanoarrow.o
 nullable.o shmem.o utilities.o -L/opt/local/lib -ltiledb
 -F/opt/local/Library/Frameworks/R.framework/.. -framework R -Wl,-framework
 -Wl,CoreFoundation
   ld: warning: -undefined dynamic_lookup may not work with chained fixups
   installing to /opt/local/var/macports/build/_Users_runner_work_macports-
 ports_macports-ports_ports_R_R-
 tiledb/R-tiledb/work/destroot/opt/local/Library/Frameworks/R.framework/Versions/4.3/Resources/library
 /00LOCK-tiledb/00new/tiledb/libs
   ** R
   ** inst
   ** byte-compile and prepare package for lazy loading
   ** help
   *** installing help indices
   ** building package indices
   ** installing vignettes
   ** testing if installed package can be loaded from temporary location
   ** checking absolute paths in shared objects and dynamic libraries
   ** testing if installed package can be loaded from final location
   ** testing if installed package keeps a record of temporary installation
 path
   * DONE (tiledb)
 }}}
 https://github.com/macports/macports-
 ports/actions/runs/6192771093/job/16813338148?pr=20432

-- 
Ticket URL: <https://trac.macports.org/ticket/68162#comment:1>
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