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<div class="moz-cite-prefix"> My .cshrc file is not changed. The
only changed file is .bash_profile (see 3).</div>
<div class="moz-cite-prefix"> </div>
<div class="moz-cite-prefix"> When I start a new terminal, it comes
with anaconda environments.</div>
<div class="moz-cite-prefix"><br>
</div>
<div class="moz-cite-prefix"> So maybe I have to comment the
.bash_profile?</div>
<div class="moz-cite-prefix"> </div>
<div class="moz-cite-prefix"> Do you use .cshrc or .bashrc file? <br>
</div>
<div class="moz-cite-prefix"> Do those "the code between
>>> conda initialize and <<<< conda
initialize" appear in your .cshrc or .bashrc file or other file?</div>
<div class="moz-cite-prefix"><br>
</div>
<div class="moz-cite-prefix"> Thanks</div>
<div class="moz-cite-prefix"> Tao<br>
</div>
<div class="moz-cite-prefix"><br>
</div>
<div class="moz-cite-prefix">On 4/29/23 10:36 AM, Balthasar
Indermuehle wrote:<br>
</div>
<blockquote type="cite" cite="mid:CAFJZw7abPAXyzWmAXgAkDssy_w_8D5SNUEyTUnUig0x39WijjA@mail.gmail.com">
<div dir="ltr">
<div>That's odd. The same procedure works fine for me.<br>
</div>
<div><br>
</div>
<div>Maybe try this:<br>
</div>
<div>Remove or comment the code between >>> conda
initialize and <<<< conda initialize in the
.cshrc, .bashrc, or whatever environment you're running.</div>
<div><br>
</div>
<div>Exit the terminal / start a new terminal</div>
<div><br>
</div>
<div>This terminal should not have loaded any anaconda
environments and whatever python version you had installed
should be working as before. Where does /opt/local/bin/python3
point?</div>
<div><br>
</div>
<div><br>
</div>
<div>
<div>
<div dir="ltr" class="gmail_signature" data-smartmail="gmail_signature">
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<div><span style="border-collapse:collapse;color:rgb(34,34,34);font-family:arial,sans-serif;font-size:13px">
<div><br>
</div>
Dr Balthasar Indermühle<br>
Inside Systems Pty Ltd</span>
<div><span style="border-collapse:collapse;color:rgb(34,34,34);font-family:arial,sans-serif;font-size:13px">5007/101
Bathurst Street</span></div>
<div><span style="border-collapse:collapse;color:rgb(34,34,34);font-family:arial,sans-serif;font-size:13px">Sydney
NSW 2000, Australia</span></div>
<div><span style="border-collapse:collapse;color:rgb(34,34,34);font-family:arial,sans-serif;font-size:13px">t: <a value="+61427912856" style="color:rgb(17,85,204)" moz-do-not-send="true">+61 (0)405
988 500</a></span></div>
<div><font face="arial, sans-serif" color="#222222"><span style="border-collapse:collapse"><br>
</span></font></div>
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<div class="gmail_quote">
<div dir="ltr" class="gmail_attr">On Sun, 30 Apr 2023 at 02:27,
Tao Zhang <<a href="mailto:tao.zhang@colorado.edu" moz-do-not-send="true" class="moz-txt-link-freetext">tao.zhang@colorado.edu</a>>
wrote:<br>
</div>
<blockquote class="gmail_quote" style="margin:0px 0px 0px
0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex">
<div>
<div>Hi Balthasar & all,</div>
<div><br>
</div>
<div> After I installed Anaconda python, previous command
"python3" and abbreviation does not work anymore (see 1)</div>
<div> I use .cshrc (see 2) file. I find that .bash_profile
is changed (see 3).</div>
<div><br>
</div>
<div> I use "conda deactivate" to exit the Anaconda python,
it does not work (see 4)</div>
<div><br>
</div>
<div> How can I return to previous state in which .cshrc and
associated command can work if I do not uninstall the
Anaconda python?</div>
<div><br>
</div>
<div> Thanks</div>
<div> Tao <br>
</div>
<div> <br>
</div>
<div><br>
</div>
<div>1) [MacBook-Pro:~] tzhang% python3<br>
python3: Command not found.<br>
<br>
</div>
<div><br>
</div>
<div>2) my .cshrc file<br>
</div>
<div>"setenv PATH
/usr/local/bin:/opt/local/bin:/opt/local/sbin:$PATH"<br>
<br>
3) .bash_profile after installing Anaconda python<br>
</div>
<div>-------------<br>
# >>> conda initialize >>><br>
# !! Contents within this block are managed by 'conda
init' !!<br>
__conda_setup="$('/Users/tzhang/anaconda3/bin/conda'
'shell.bash' 'hook' 2> /dev/null)"<br>
if [ $? -eq 0 ]; then<br>
eval "$__conda_setup"<br>
else<br>
if [ -f
"/Users/tzhang/anaconda3/etc/profile.d/conda.sh" ]; then<br>
. "/Users/tzhang/anaconda3/etc/profile.d/conda.sh"<br>
else<br>
export PATH="/Users/tzhang/anaconda3/bin:$PATH"<br>
fi<br>
fi<br>
unset __conda_setup<br>
# <<< conda initialize <<<</div>
<div>-------<br>
</div>
<div><br>
</div>
<div>4)<br>
</div>
<div>[MacBook-Pro:~] tzhang% conda deactivate<br>
[MacBook-Pro:~] tzhang% python3<br>
python3: Command not found.<br>
<br>
</div>
<div><br>
</div>
<div><br>
</div>
<div>On 4/28/23 6:57 PM, Balthasar Indermuehle wrote:<br>
</div>
<blockquote type="cite">
<div dir="auto">The same, so long as your anaconda
environment is activated. Type conda activate <env
name> to activate </div>
<div><br>
<div class="gmail_quote">
<div dir="ltr" class="gmail_attr">On Sat, 29 Apr 2023
at 10:49, Tao Zhang <<a href="mailto:tao.zhang@colorado.edu" target="_blank" moz-do-not-send="true" class="moz-txt-link-freetext">tao.zhang@colorado.edu</a>>
wrote:<br>
</div>
<blockquote class="gmail_quote" style="margin:0px 0px
0px 0.8ex;border-left:1px solid
rgb(204,204,204);padding-left:1ex">
<div>
<div>Hi Balthasar,</div>
<div><br>
</div>
<div> Thanks for your helpful info. <br>
</div>
<div><br>
</div>
<div> For now, I am using "python3 filename.py"
to run python code in Mac terminal.</div>
<div> </div>
<div> I am asking what's the new command to run
python code with Anaconda in the terminal?</div>
<div> </div>
<div> Thanks</div>
</div>
<div>
<div> Tao</div>
<div><br>
</div>
<div><br>
</div>
<div>On 4/28/23 6:30 PM, Balthasar Indermuehle
wrote:<br>
</div>
<blockquote type="cite">
<div dir="ltr">
<div>Anaconda/miniconda install themselves
into a completely separate directory.<br>
</div>
<div><br>
</div>
<div>On installing, it'll offer to add itself
to the startup scripts so when you open a
terminal, it will automatically load the
anaconda/miniconda environment. type "conda
deactivate" to exit from that if you want to
use your other local python install.</div>
<div><br>
</div>
<div>I personally found myself moving towards
anaconda immediately after installing it for
the first time. Removes a huge headache of
package compatibility issues. Just create a
new environment if you need to use a package
that doesn't play nice with others.<br>
</div>
<br>
</div>
<br>
<div class="gmail_quote">
<div dir="ltr" class="gmail_attr">On Sat, 29
Apr 2023 at 10:13, Tao Zhang <<a href="mailto:tao.zhang@colorado.edu" target="_blank" moz-do-not-send="true" class="moz-txt-link-freetext">tao.zhang@colorado.edu</a>>
wrote:<br>
</div>
<blockquote class="gmail_quote" style="margin:0px 0px 0px
0.8ex;border-left:1px solid
rgb(204,204,204);padding-left:1ex">Hi, all<br>
<br>
I want to attend a python workshop which
requires the installation of <br>
Anaconda Python, see the info. below.<br>
<br>
Since I have already installed python in
my Macbook pro through <br>
Macport (see info. below),<br>
<br>
I am asking if I still need to install
Anaconda Python?<br>
<br>
Does this Anaconda Python conflict with
the installed Macport python?<br>
<br>
Thanks<br>
<br>
Tao<br>
<br>
/Users/tzhang> which python3<br>
/opt/local/bin/python3<br>
/Users/tzhang> python3<br>
Python 3.9.1 (default, Dec 8 2020,
11:52:28)<br>
[Clang 10.0.1 (clang-1001.0.46.4)] on darwin<br>
Type "help", "copyright", "credits" or
"license" for more information.<br>
>>><br>
<br>
-----------------------------<br>
<br>
commands.<br>
9:00 - 10:00<br>
Office hours by appointment: Python/Anaconda
Troubleshooting and Assistance<br>
10:00 - 10:05 (5 min)<br>
Welcome and opening remarks<br>
Topic<br>
Application/Package(s)<br>
10:05 - 10:45<br>
(40 mins)<br>
Topic 1: Getting Started with Python and
Jupyter Notebooks<br>
Jupyter Notebook<br>
NumPy<br>
Pandas<br>
<br>
Notes:<br>
• This tutorial is hands on, you will need
to have Anaconda (or <br>
miniconda) Python installed on your computer
prior to the workshop<br>
<br>
Install Python via Anaconda<br>
Install the latest version of Anaconda on
your local machine for this <br>
tutorial.<br>
Need help installing Anaconda? Video
tutorial on YouTube. Note: some of <br>
the packages in the video might not apply to
this workshop. Use the list <br>
below.<br>
Additional packages: Install the following
extra package for Python by <br>
going to Start Anaconda3 Anaconda Prompt
(PC Users) or the terminal <br>
(Mac/Linux users) and type:<br>
conda install -c conda-forge cartopy<br>
conda install -c conda-forge h5netcdf<br>
conda install -c conda-forge xarray<br>
conda install -c conda-forge s3fs<br>
<br>
Check if the install is successful<br>
Launch Jupyter Notebooks from the Anaconda
Navigator<br>
• PC Users: Go to Start Anaconda3
Jupyter Notebook<br>
• Mac/Linux Users: Type Jupyter notebook
into the terminal<br>
<br>
---------------<br>
<br>
</blockquote>
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<span>-- </span><br>
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<div><span style="border-collapse:collapse;color:rgb(34,34,34);font-family:arial,sans-serif;font-size:13px">
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</div>
Dr Balthasar Indermühle<br>
Inside Systems Pty Ltd</span>
<div><span style="border-collapse:collapse;color:rgb(34,34,34);font-family:arial,sans-serif;font-size:13px">5007/101
Bathurst Street</span></div>
<div><span style="border-collapse:collapse;color:rgb(34,34,34);font-family:arial,sans-serif;font-size:13px">Sydney
NSW 2000, Australia</span></div>
<div><span style="border-collapse:collapse;color:rgb(34,34,34);font-family:arial,sans-serif;font-size:13px">t: <a value="+61427912856" style="color:rgb(17,85,204)" moz-do-not-send="true">+61 (0)405
988 500</a></span></div>
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