[39336] trunk/dports/science/ncbi_tools/Portfile
raimue at macports.org
raimue at macports.org
Mon Aug 18 05:59:56 PDT 2008
Revision: 39336
http://trac.macosforge.org/projects/macports/changeset/39336
Author: raimue at macports.org
Date: 2008-08-18 05:59:55 -0700 (Mon, 18 Aug 2008)
Log Message:
-----------
science/ncbi_tools:
Maintainer update to version 20080302, cloese #16241.
Modified Paths:
--------------
trunk/dports/science/ncbi_tools/Portfile
Modified: trunk/dports/science/ncbi_tools/Portfile
===================================================================
--- trunk/dports/science/ncbi_tools/Portfile 2008-08-18 11:34:44 UTC (rev 39335)
+++ trunk/dports/science/ncbi_tools/Portfile 2008-08-18 12:59:55 UTC (rev 39336)
@@ -1,64 +1,57 @@
# $Id$
+
PortSystem 1.0
-name ncbi_tools
-version 20070826
-description blast is a set of tools for doing nucleotide and protein searches
-maintainers michael.thon at yahoo.com
-categories science
-platforms darwin
-homepage http://www.ncbi.nlm.nih.gov/blast/
-fetch.use_epsv no
-master_sites ftp://ftp.ncbi.nlm.nih.gov/toolbox/ncbi_tools/old/20070822
+
+name ncbi_tools
+version 20080302
+description blast is a set of tools for doing nucleotide and protein searches
+maintainers mike.thon at gmail.com
+categories science
+platforms darwin
+homepage http://www.ncbi.nlm.nih.gov/blast/
+fetch.use_epsv no
+master_sites ftp://ftp.ncbi.nlm.nih.gov/toolbox/ncbi_tools/old/20080302
distfiles ncbi.tar.gz
-checksums md5 c17f7b08c12823e4320661894110dcb1
+checksums md5 f8de9d7264aed7de1d87d2185df2e07c
dist_subdir ${name}/${version}
-worksrcdir
+worksrcdir
use_configure no
build.cmd './ncbi/make/makedis.csh'
build.target
-set binaries "Psequin blastclust findspl psiblast.REAL \
-asn2ff blastpgp formatdb psiblast_cs.REAL \
-asn2gb cdscan formatrpsdb rpsblast \
-asn2idx checksub gene2xml sbtedit \
-asn2xml copymat getmesh seedtop \
-asndhuff ddv getpub seqtest \
-asntool debruijn gil2bin tbl2asn \
-bl2bag.cgi demo_regexp idfetch test_regexp \
-bl2seq demo_regexp_grep impala testcore \
-blast dosimple indexpub testobj \
-blast.REAL entrcmd makemat testval \
-blast_cs.REAL entrez2 makeset udv \
-blastall errhdr megablast vecscreen \
-blastall_old fa2htgs ncbisort wblast2.REAL \
-blastcl3 fastacmd nph-viewgif.cgi wblast2_cs.REAL"
+set binaries "Psequin blastall dosimple gil2bin sbtedit \
+asn2ff blastall_old entrcmd idfetch seedtop \
+asn2gb blastcl3 entrez2 impala seqtest \
+asn2idx blastclust errhdr indexpub tbl2asn \
+asn2xml blastpgp fa2htgs makemat test_regexp \
+asndhuff cdscan fastacmd makeset testcore \
+asntool checksub findspl megablast testobj \
+bl2bag.cgi copymat formatdb ncbisort testval \
+bl2seq ddv formatrpsdb nph-viewgif.cgi udv \
+blast debruijn gene2xml psiblast.REAL vecscreen \
+blast.REAL demo_regexp getmesh psiblast_cs.REAL wblast2.REAL \
+blast_cs.REAL demo_regexp_grep getpub rpsblast wblast2_cs.REAL"
-set manpages " Nentrez.1 blastall_old.1 findspl.1 makeset.1 \
-Psequin.1 blastcl3.1 fmerge.1 megablast.1 \
-asn2all.1 blastclust.1 formatdb.1 netentcf.1 \
-asn2asn.1 blastpgp.1 formatrpsdb.1 nps2gps.1 \
-asn2ff.1 cdscan.1 gbseqget.1 rpsblast.1 \
-asn2fsa.1 checksub.1 gene2xml.1 sbtedit.1 \
-asn2gb.1 cleanasn.1 getfeat.1 seedtop.1 \
-asn2idx.1 copymat.1 getmesh.1 sortbyquote.1 \
-asn2xml.1 ddv.1 getpub.1 spidey.1 \
-asndhuff.1 debruijn.1 gil2bin.1 tbl2asn.1 \
-asntool.1 entrcmd.1 idfetch.1 trna2sap.1 \
-asnval.1 entrez2.1 impala.1 trna2tbl.1 \
-bl2seq.1 errhdr.1 indexpub.1 udv.1 \
-blast.1 fa2htgs.1 insdseqget.1 vecscreen.1 \
-blastall.1 fastacmd.1 makemat.1"
+set manpages "Psequin.1 asnval.1 cleanasn.1 formatdb.1 insdseqget.1 tbl2asn.1 \
+asn2all.1 bl2seq.1 copymat.1 formatrpsdb.1 makemat.1 trna2sap.1 \
+asn2asn.1 blast.1 ddv.1 gbseqget.1 makeset.1 trna2tbl.1 \
+asn2ff.1 blastall.1 debruijn.1 gene2xml.1 megablast.1 udv.1 \
+asn2fsa.1 blastall_old.1 entrez2.1 getmesh.1 nps2gps.1 vecscreen.1 \
+asn2gb.1 blastcl3.1 errhdr.1 getpub.1 rpsblast.1 \
+asn2idx.1 blastclust.1 fa2htgs.1 gil2bin.1 sbtedit.1 \
+asn2xml.1 blastpgp.1 fastacmd.1 idfetch.1 seedtop.1 \
+asndhuff.1 cdscan.1 findspl.1 impala.1 sortbyquote.1 \
+asntool.1 checksub.1 fmerge.1 indexpub.1 spidey.1"
-
destroot {
- xinstall -d 755 ${destroot}${prefix}/share/doc/${name}
- file copy ${worksrcpath}/ncbi/doc ${destroot}${prefix}/share/doc/${name}
- foreach binary ${binaries} {
- xinstall -m 755 ${worksrcpath}/ncbi/bin/${binary} ${destroot}${prefix}/bin/
- }
- foreach manpage ${manpages} {
- xinstall -m 444 ${worksrcpath}/ncbi/doc/man/${manpage} ${destroot}${prefix}/share/man/man1/
- }
+ xinstall -m 755 -d ${destroot}${prefix}/share/doc/${name}
+ file copy ${worksrcpath}/ncbi/doc ${destroot}${prefix}/share/doc/${name}
+ foreach binary ${binaries} {
+ xinstall -m 755 ${worksrcpath}/ncbi/bin/${binary} ${destroot}${prefix}/bin/
+ }
+ foreach manpage ${manpages} {
+ xinstall -m 444 ${worksrcpath}/ncbi/doc/man/${manpage} ${destroot}${prefix}/share/man/man1/
+ }
}
-long_description ${description}
-livecheck.check moddate
+long_description ${description}
+livecheck.check moddate
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