[53809] trunk/dports/science
mmoll at macports.org
mmoll at macports.org
Tue Jul 14 05:27:03 PDT 2009
Revision: 53809
http://trac.macports.org/changeset/53809
Author: mmoll at macports.org
Date: 2009-07-14 05:27:01 -0700 (Tue, 14 Jul 2009)
Log Message:
-----------
new port: hmmer, a biological sequence comparison tool
Added Paths:
-----------
trunk/dports/science/hmmer/
trunk/dports/science/hmmer/Portfile
trunk/dports/science/hmmer/files/
trunk/dports/science/hmmer/files/patch-Makefile.in.diff
Added: trunk/dports/science/hmmer/Portfile
===================================================================
--- trunk/dports/science/hmmer/Portfile (rev 0)
+++ trunk/dports/science/hmmer/Portfile 2009-07-14 12:27:01 UTC (rev 53809)
@@ -0,0 +1,28 @@
+# $Id$
+
+PortSystem 1.0
+
+name hmmer
+version 3.0b2
+categories science
+maintainers mmoll openmaintainer
+description HMMER searches biological sequence databases for \
+ homologous sequences.
+long_description HMMER searches biological sequence databases for \
+ homologous sequences, using either single sequences or multiple \
+ sequence alignments as queries. HMMER implements a technology \
+ called "profile hidden Markov models" (profile HMMs). HMMER is \
+ the software engine underlying many protein family domain \
+ databases and large-scale annotation pipelines, including the \
+ Pfam and SMART databases.
+homepage http://hmmer.janelia.org/
+platforms darwin
+master_sites ftp://selab.janelia.org/pub/software/hmmer3/
+checksums md5 b8f5f2baa9e56ed029fea9e6939f8d36 \
+ sha1 8466c180a9678c5ead58cf66d8d52879218e77ef \
+ rmd160 693705a0f2ffb507c037a23a44cfa7c95289978c
+patchfiles patch-Makefile.in.diff
+use_parallel_build no
+livecheck.check regex
+livecheck.url ${homepage}
+livecheck.regex The current version is HMMER (\[0-9.b\]+)
Property changes on: trunk/dports/science/hmmer/Portfile
___________________________________________________________________
Added: svn:keywords
+ Id
Added: svn:eol-style
+ native
Added: trunk/dports/science/hmmer/files/patch-Makefile.in.diff
===================================================================
--- trunk/dports/science/hmmer/files/patch-Makefile.in.diff (rev 0)
+++ trunk/dports/science/hmmer/files/patch-Makefile.in.diff 2009-07-14 12:27:01 UTC (rev 53809)
@@ -0,0 +1,11 @@
+--- Makefile.in.orig 2009-07-14 07:07:08.000000000 -0500
++++ Makefile.in 2009-07-14 07:07:29.000000000 -0500
+@@ -148,7 +148,7 @@
+ # Creates these directories if they don't exist.
+ # Prefix those paths with ${DESTDIR} (rarely used, usually null;
+ # may be set on a make command line when building contrib RPMs).
+-install:
++install: all
+ cd ${ESLDIR}; ${MAKE} easel_lib
+ cd ${ESLDIR}; ${MAKE} easel_progs
+ cd ${IMPLDIR}; ${MAKE} impl_lib
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