[53809] trunk/dports/science

mmoll at macports.org mmoll at macports.org
Tue Jul 14 05:27:03 PDT 2009


Revision: 53809
          http://trac.macports.org/changeset/53809
Author:   mmoll at macports.org
Date:     2009-07-14 05:27:01 -0700 (Tue, 14 Jul 2009)
Log Message:
-----------
new port: hmmer, a biological sequence comparison tool

Added Paths:
-----------
    trunk/dports/science/hmmer/
    trunk/dports/science/hmmer/Portfile
    trunk/dports/science/hmmer/files/
    trunk/dports/science/hmmer/files/patch-Makefile.in.diff

Added: trunk/dports/science/hmmer/Portfile
===================================================================
--- trunk/dports/science/hmmer/Portfile	                        (rev 0)
+++ trunk/dports/science/hmmer/Portfile	2009-07-14 12:27:01 UTC (rev 53809)
@@ -0,0 +1,28 @@
+# $Id$
+
+PortSystem 1.0
+
+name                hmmer
+version             3.0b2
+categories          science
+maintainers         mmoll openmaintainer
+description         HMMER searches biological sequence databases for \
+        homologous sequences.
+long_description    HMMER searches biological sequence databases for \
+        homologous sequences, using either single sequences or multiple \
+        sequence alignments as queries. HMMER implements a technology \
+        called "profile hidden Markov models" (profile HMMs). HMMER is \
+        the software engine underlying many protein family domain \
+        databases and large-scale annotation pipelines, including the \
+        Pfam and SMART databases.
+homepage            http://hmmer.janelia.org/
+platforms           darwin
+master_sites        ftp://selab.janelia.org/pub/software/hmmer3/
+checksums           md5     b8f5f2baa9e56ed029fea9e6939f8d36 \
+                    sha1    8466c180a9678c5ead58cf66d8d52879218e77ef \
+                    rmd160  693705a0f2ffb507c037a23a44cfa7c95289978c
+patchfiles          patch-Makefile.in.diff
+use_parallel_build  no
+livecheck.check     regex
+livecheck.url       ${homepage}
+livecheck.regex     The current version is HMMER (\[0-9.b\]+)


Property changes on: trunk/dports/science/hmmer/Portfile
___________________________________________________________________
Added: svn:keywords
   + Id
Added: svn:eol-style
   + native

Added: trunk/dports/science/hmmer/files/patch-Makefile.in.diff
===================================================================
--- trunk/dports/science/hmmer/files/patch-Makefile.in.diff	                        (rev 0)
+++ trunk/dports/science/hmmer/files/patch-Makefile.in.diff	2009-07-14 12:27:01 UTC (rev 53809)
@@ -0,0 +1,11 @@
+--- Makefile.in.orig	2009-07-14 07:07:08.000000000 -0500
++++ Makefile.in	2009-07-14 07:07:29.000000000 -0500
+@@ -148,7 +148,7 @@
+ #          Creates these directories if they don't exist.
+ #          Prefix those paths with ${DESTDIR} (rarely used, usually null;
+ #          may be set on a make command line when building contrib RPMs).
+-install: 
++install: all
+ 	cd ${ESLDIR};   ${MAKE} easel_lib
+ 	cd ${ESLDIR};   ${MAKE} easel_progs
+ 	cd ${IMPLDIR};  ${MAKE} impl_lib
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