[50990] trunk/dports

[snc at macports.org]

Revision: 50990
          http://trac.macports.org/changeset/50990
Author:   snc at macports.org
Date:     2009-05-14 15:09:26 -0700 (Thu, 14 May 2009)
Log Message:
-----------
created clustalx (interface for the general purpose multiple alignment program for DNA or proteins), openmaintainer

Added Paths:
-----------
    trunk/dports/clustalx/
    trunk/dports/clustalx/Portfile
    trunk/dports/clustalx/files/
    trunk/dports/clustalx/files/clustalx.in

Added: trunk/dports/clustalx/Portfile
===================================================================
--- trunk/dports/clustalx/Portfile	                        (rev 0)
+++ trunk/dports/clustalx/Portfile	2009-05-14 22:09:26 UTC (rev 50990)
@@ -0,0 +1,47 @@
+# -*- coding: utf-8; mode: tcl; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- vim:fenc=utf-8:ft=tcl:et:sw=4:ts=4:sts=4
+# $Id$
+
+PortSystem          1.0
+
+name                clustalx
+#license             custom
+version             2.0.11
+categories          science
+maintainers         snc openmaintainer
+description         An interface for the ClustalW multiple sequence alignment\
+                    program.
+long_description    ${name} provides an integrated environment for performing\
+                    multiple sequence and profile alignments and analysing the\
+                    results. The sequence alignment is displayed in a window on\
+                    the screen. A versatile coloring scheme has been\
+                    incorporated allowing you to highlight conserved features\
+                    in the alignment. The pull-down menus at the top of the\
+                    window allow you to select all the options required for\
+                    traditional multiple sequence and profile alignment.
+homepage            http://www.clustal.org/
+
+platforms           darwin
+depends_build       port:qt4-x11
+
+master_sites        http://www.clustal.org/download/current/ \
+                    ftp://ftp.ebi.ac.uk/pub/software/clustalw2/${version}/
+
+checksums           md5    fa208a3e111182e03a03e2fdac1343a1 \
+                    sha1   815cb1f0158778f2cdad8161dc8529069e86904c \
+                    rmd160 310d2be671494830535e7c49189bea04b44511e8
+
+configure.cmd       ${prefix}/libexec/qt4-x11/bin/qmake
+configure.pre_args  PREFIX=${prefix}
+configure.args      -macx
+
+destroot {
+    xinstall -d ${destroot}${prefix}/libexec/${name}/
+    xinstall -m 644 -W ${worksrcpath} \
+        colprot.xml coldna.xml colprint.xml clustalx.hlp \
+        ${destroot}${prefix}/libexec/${name}/
+    xinstall -m 755 ${worksrcpath}/${name} ${destroot}${prefix}/libexec/${name}/
+
+    xinstall -m 755 ${filespath}/clustalx.in ${destroot}${prefix}/bin/${name}
+    reinplace s|@PREFIX@|${prefix}|g ${destroot}${prefix}/bin/${name}
+    reinplace s|@NAME@|${name}|g ${destroot}${prefix}/bin/${name}
+}


Property changes on: trunk/dports/clustalx/Portfile
___________________________________________________________________
Added: svn:keywords
   + Id
Added: svn:eol-style
   + native

Added: trunk/dports/clustalx/files/clustalx.in
===================================================================
--- trunk/dports/clustalx/files/clustalx.in	                        (rev 0)
+++ trunk/dports/clustalx/files/clustalx.in	2009-05-14 22:09:26 UTC (rev 50990)
@@ -0,0 +1,5 @@
+#!/bin/bash
+export OLDPWD=`pwd`
+cd @PREFIX@/libexec/@NAME@/
+./@NAME@
+cd $OLDPWD
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