[72789] trunk/dports/science

[ryandesign at macports.org]

Revision: 72789
          http://trac.macports.org/changeset/72789
Author:   ryandesign at macports.org
Date:     2010-10-26 15:28:44 -0700 (Tue, 26 Oct 2010)
Log Message:
-----------
cufflinks: new port, version 0.9.1, see #26999

Added Paths:
-----------
    trunk/dports/science/cufflinks/
    trunk/dports/science/cufflinks/Portfile

Added: trunk/dports/science/cufflinks/Portfile
===================================================================
--- trunk/dports/science/cufflinks/Portfile	                        (rev 0)
+++ trunk/dports/science/cufflinks/Portfile	2010-10-26 22:28:44 UTC (rev 72789)
@@ -0,0 +1,42 @@
+# $Id$
+
+PortSystem          1.0
+
+name                cufflinks
+version             0.9.1
+categories          science biology
+platforms           darwin
+maintainers         gmail.com:haroldpimentel
+license             Boost
+
+description         Cufflinks assembles transcripts, estimates their abundances,\
+                    and tests for differential expression and regulation in RNA-Seq samples.
+
+long_description    Cufflinks assembles transcripts, estimates their abundances, \
+                    and tests for differential expression and regulation in RNA-Seq \
+                    samples. It accepts aligned RNA-Seq reads and assembles the \
+                    alignments into a parsimonious set of transcripts. \
+                    Cufflinks then estimates the relative abundances of these \
+                    transcripts based on how many reads support each one.
+
+homepage            http://cufflinks.cbcb.umd.edu/
+master_sites        ${homepage}downloads
+
+checksums           sha1        172398c87bd5fb55ccea1d545769990e94a17e1e\
+                    rmd160      9933360dd3b8fb32072a11521ec6d8be2077970b
+
+depends_lib         port:zlib \
+                    port:samtools \
+                    port:boost
+
+# samtools is not universal
+universal_variant   no
+
+post-destroot {
+    xinstall -d ${destroot}${prefix}/share/doc/${name}
+    xinstall -m 644 -W ${worksrcpath} \
+        AUTHORS \
+        LICENSE \
+        README \
+        ${destroot}${prefix}/share/doc/${name}
+}


Property changes on: trunk/dports/science/cufflinks/Portfile
___________________________________________________________________
Added: svn:keywords
   + Id
Added: svn:eol-style
   + native
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