[72867] trunk/dports/science

[ryandesign at macports.org]

Revision: 72867
          http://trac.macports.org/changeset/72867
Author:   ryandesign at macports.org
Date:     2010-10-29 00:00:48 -0700 (Fri, 29 Oct 2010)
Log Message:
-----------
bowtie: new port, version 0.12.7; see #26990

Added Paths:
-----------
    trunk/dports/science/bowtie/
    trunk/dports/science/bowtie/Portfile

Added: trunk/dports/science/bowtie/Portfile
===================================================================
--- trunk/dports/science/bowtie/Portfile	                        (rev 0)
+++ trunk/dports/science/bowtie/Portfile	2010-10-29 07:00:48 UTC (rev 72867)
@@ -0,0 +1,54 @@
+# -*- coding: utf-8; mode: tcl; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- vim:fenc=utf-8:ft=tcl:et:sw=4:ts=4:sts=4
+# $Id$
+
+PortSystem          1.0
+
+name                bowtie
+version             0.12.7
+categories          science biology
+platforms           darwin
+maintainers         gmail.com:haroldpimentel
+license             Artistic
+
+description         an ultrafast, memory-efficient short read aligner
+
+long_description    Bowtie is ${description}. It aligns short DNA sequences \
+                    (reads) to the human genome at a rate of over 25 million \
+                    35-bp reads per hour. Bowtie indexes the genome with a \
+                    Burrows-Wheeler index to keep its memory footprint small: \
+                    typically about 2.2 GB for the human genome (2.9 GB for \
+                    paired-end).
+
+homepage            http://bowtie-bio.sourceforge.net/
+master_sites        sourceforge:bowtie-bio
+use_zip             yes
+extract.suffix      -src${extract.suffix}
+
+checksums           sha1        0eb752db072a2da6fc6dac55d2ab825422e994ce \
+                    rmd160      7b2210d4526c4818936b729b0e68f4c13a101fc6
+
+use_configure       no
+
+build.target        allall
+
+destroot {
+    xinstall -W ${worksrcpath} \
+        bowtie \
+        bowtie-debug \
+        bowtie-build \
+        bowtie-build-debug \
+        bowtie-inspect \
+        bowtie-inspect-debug \
+        ${destroot}${prefix}/bin
+    
+    xinstall -d ${destroot}${prefix}/share/doc/${name}
+    xinstall -m 644 -W ${worksrcpath} \
+        AUTHORS \
+        COPYING \
+        MANUAL \
+        NEWS \
+        TUTORIAL \
+        VERSION \
+        MANUAL.markdown \
+        ${destroot}${prefix}/share/doc/${name}
+}


Property changes on: trunk/dports/science/bowtie/Portfile
___________________________________________________________________
Added: svn:keywords
   + Id
Added: svn:eol-style
   + native
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