[72870] trunk/dports/science

[ryandesign at macports.org]

Revision: 72870
          http://trac.macports.org/changeset/72870
Author:   ryandesign at macports.org
Date:     2010-10-29 00:09:11 -0700 (Fri, 29 Oct 2010)
Log Message:
-----------
tophat: new port, version 1.1.1; see #26991

Added Paths:
-----------
    trunk/dports/science/tophat/
    trunk/dports/science/tophat/Portfile

Added: trunk/dports/science/tophat/Portfile
===================================================================
--- trunk/dports/science/tophat/Portfile	                        (rev 0)
+++ trunk/dports/science/tophat/Portfile	2010-10-29 07:09:11 UTC (rev 72870)
@@ -0,0 +1,32 @@
+# -*- coding: utf-8; mode: tcl; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- vim:fenc=utf-8:ft=tcl:et:sw=4:ts=4:sts=4
+# $Id$
+
+PortSystem          1.0
+
+name                tophat
+version             1.1.1
+categories          science biology
+platforms           darwin
+maintainers         gmail.com:haroldpimentel
+
+description         a fast splice junction mapper for RNA-Seq reads
+
+long_description    TopHat is ${description}. It aligns RNA-Seq reads to \
+                    mammalian-sized genomes using the ultra high-throughput \
+                    short read aligner Bowtie, and then analyzes the mapping \
+                    results to identify splice junctions between exons.
+
+homepage            http://tophat.cbcb.umd.edu/
+master_sites        ${homepage}downloads/
+
+checksums           sha1        4671094ce142820ed2d4ba8a57eb787e215d2d3e \
+                    rmd160      b758a9f9d8e758a146ecac4dc21db9d154fb3faf
+
+use_parallel_build  no
+
+depends_lib         port:zlib \
+                    port:samtools \
+                    port:bowtie
+
+# samtools and bowtie are not universal
+universal_variant   no


Property changes on: trunk/dports/science/tophat/Portfile
___________________________________________________________________
Added: svn:keywords
   + Id
Added: svn:eol-style
   + native
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