[77642] trunk/dports/python
adfernandes at macports.org
adfernandes at macports.org
Thu Apr 7 06:54:55 PDT 2011
Revision: 77642
http://trac.macports.org/changeset/77642
Author: adfernandes at macports.org
Date: 2011-04-07 06:54:54 -0700 (Thu, 07 Apr 2011)
Log Message:
-----------
python/*-biopython : trivial version update to 1.57
Modified Paths:
--------------
trunk/dports/python/py-biopython/Portfile
trunk/dports/python/py25-biopython/Portfile
trunk/dports/python/py26-biopython/Portfile
trunk/dports/python/py27-biopython/Portfile
Added Paths:
-----------
trunk/dports/python/py-biopython/files/
trunk/dports/python/py-biopython/files/patch-setup.diff
Modified: trunk/dports/python/py-biopython/Portfile
===================================================================
--- trunk/dports/python/py-biopython/Portfile 2011-04-07 13:41:27 UTC (rev 77641)
+++ trunk/dports/python/py-biopython/Portfile 2011-04-07 13:54:54 UTC (rev 77642)
@@ -1,3 +1,4 @@
+# -*- coding: utf-8; mode: tcl; tab-width: 4; truncate-lines: t; indent-tabs-mode: nil; c-basic-offset: 4 -*- vim:fenc=utf-8:et:sw=4:ts=4:sts=4
# $Id$
PortSystem 1.0
@@ -4,9 +5,10 @@
PortGroup python24 1.0
name py-biopython
-version 1.49
+version 1.57
+#revision 1
categories python science
-maintainers mww
+maintainers mww openmaintainer
platforms darwin
description python tools for computational molecular biology
long_description python tools for computational molecular biology: \
@@ -16,13 +18,13 @@
homepage http://www.biopython.org/
master_sites ${homepage}/DIST
distname biopython-${version}
-checksums md5 d233d4944f0c17d5927ca32c5a30d5b3 \
- sha1 f2ea7f3b8985facdf8f4d4c86ee300e4a8f1a5fb \
- rmd160 3d6893cd788c39512a314345bb2ea441c715c17d
-
+checksums md5 b095f038684613573fcffb16593a702a \
+ sha1 dbbd23c9f555e0c69d61db96f8aa368617ecacef \
+ rmd160 ae061442a97decbd9951af8f85913bbc3747ffee
+patchfiles patch-setup.diff
depends_lib-append port:py-numpy \
- port:py-mx \
- port:py-reportlab
+ port:py-reportlab \
+ port:flex
build.env CFLAGS=-I${python.include}
Copied: trunk/dports/python/py-biopython/files/patch-setup.diff (from rev 77439, trunk/dports/python/py27-biopython/files/patch-setup.diff)
===================================================================
--- trunk/dports/python/py-biopython/files/patch-setup.diff (rev 0)
+++ trunk/dports/python/py-biopython/files/patch-setup.diff 2011-04-07 13:54:54 UTC (rev 77642)
@@ -0,0 +1,23 @@
+--- setup.py.orig 2011-01-10 16:10:04.000000000 -0500
++++ setup.py 2011-01-10 16:23:44.000000000 -0500
+@@ -303,13 +303,13 @@
+ 'Bio/trie.c'],
+ include_dirs=["Bio"]
+ ),
+-#Commented out due to the build dependency on flex, see Bug 2619
+-# Extension('Bio.PDB.mmCIF.MMCIFlex',
+-# ['Bio/PDB/mmCIF/lex.yy.c',
+-# 'Bio/PDB/mmCIF/MMCIFlexmodule.c'],
+-# include_dirs=["Bio"],
+-# libraries=["fl"]
+-# ),
++# Commented out due to the build dependency on flex, see Bug 2619
++ Extension('Bio.PDB.mmCIF.MMCIFlex',
++ ['Bio/PDB/mmCIF/lex.yy.c',
++ 'Bio/PDB/mmCIF/MMCIFlexmodule.c'],
++ include_dirs=["Bio"],
++ libraries=["fl"]
++ ),
+ Extension('Bio.Nexus.cnexus',
+ ['Bio/Nexus/cnexus.c']
+ ),
Modified: trunk/dports/python/py25-biopython/Portfile
===================================================================
--- trunk/dports/python/py25-biopython/Portfile 2011-04-07 13:41:27 UTC (rev 77641)
+++ trunk/dports/python/py25-biopython/Portfile 2011-04-07 13:54:54 UTC (rev 77642)
@@ -5,8 +5,8 @@
PortGroup python25 1.0
name py25-biopython
-version 1.56
-revision 1
+version 1.57
+#revision 1
categories python science
maintainers mww openmaintainer
platforms darwin
@@ -18,9 +18,9 @@
homepage http://www.biopython.org/
master_sites ${homepage}/DIST
distname biopython-${version}
-checksums md5 19e6481e7724b7dadb1c9d0b956c9b77 \
- sha1 d33dda23adb148cf4ae0fa5eb37f7396b26c856f \
- rmd160 a1c2b0daa4a881052b5e300c59293b8896240f2c
+checksums md5 b095f038684613573fcffb16593a702a \
+ sha1 dbbd23c9f555e0c69d61db96f8aa368617ecacef \
+ rmd160 ae061442a97decbd9951af8f85913bbc3747ffee
patchfiles patch-setup.diff
depends_lib-append port:py25-numpy \
port:py25-reportlab \
Modified: trunk/dports/python/py26-biopython/Portfile
===================================================================
--- trunk/dports/python/py26-biopython/Portfile 2011-04-07 13:41:27 UTC (rev 77641)
+++ trunk/dports/python/py26-biopython/Portfile 2011-04-07 13:54:54 UTC (rev 77642)
@@ -5,8 +5,8 @@
PortGroup python26 1.0
name py26-biopython
-version 1.56
-revision 1
+version 1.57
+#revision 1
categories python science
maintainers mmoll openmaintainer
platforms darwin
@@ -18,9 +18,9 @@
homepage http://www.biopython.org/
master_sites ${homepage}/DIST
distname biopython-${version}
-checksums md5 19e6481e7724b7dadb1c9d0b956c9b77 \
- sha1 d33dda23adb148cf4ae0fa5eb37f7396b26c856f \
- rmd160 a1c2b0daa4a881052b5e300c59293b8896240f2c
+checksums md5 b095f038684613573fcffb16593a702a \
+ sha1 dbbd23c9f555e0c69d61db96f8aa368617ecacef \
+ rmd160 ae061442a97decbd9951af8f85913bbc3747ffee
patchfiles patch-setup.diff
depends_lib-append port:py26-numpy \
port:py26-reportlab \
Modified: trunk/dports/python/py27-biopython/Portfile
===================================================================
--- trunk/dports/python/py27-biopython/Portfile 2011-04-07 13:41:27 UTC (rev 77641)
+++ trunk/dports/python/py27-biopython/Portfile 2011-04-07 13:54:54 UTC (rev 77642)
@@ -5,8 +5,8 @@
PortGroup python27 1.0
name py27-biopython
-version 1.56
-revision 1
+version 1.57
+#revision 1
categories python science
maintainers mmoll openmaintainer
platforms darwin
@@ -18,9 +18,9 @@
homepage http://www.biopython.org/
master_sites ${homepage}/DIST
distname biopython-${version}
-checksums md5 19e6481e7724b7dadb1c9d0b956c9b77 \
- sha1 d33dda23adb148cf4ae0fa5eb37f7396b26c856f \
- rmd160 a1c2b0daa4a881052b5e300c59293b8896240f2c
+checksums md5 b095f038684613573fcffb16593a702a \
+ sha1 dbbd23c9f555e0c69d61db96f8aa368617ecacef \
+ rmd160 ae061442a97decbd9951af8f85913bbc3747ffee
patchfiles patch-setup.diff
depends_lib-append port:py27-numpy \
port:py27-reportlab \
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