[83327] trunk/dports/science/bali-phy
adfernandes at macports.org
adfernandes at macports.org
Mon Aug 29 13:33:48 PDT 2011
Revision: 83327
http://trac.macports.org/changeset/83327
Author: adfernandes at macports.org
Date: 2011-08-29 13:33:48 -0700 (Mon, 29 Aug 2011)
Log Message:
-----------
science/bali-phi: trivial update to 2.1.1
Modified Paths:
--------------
trunk/dports/science/bali-phy/Portfile
trunk/dports/science/bali-phy/files/configure.patch
Modified: trunk/dports/science/bali-phy/Portfile
===================================================================
--- trunk/dports/science/bali-phy/Portfile 2011-08-29 19:52:06 UTC (rev 83326)
+++ trunk/dports/science/bali-phy/Portfile 2011-08-29 20:33:48 UTC (rev 83327)
@@ -3,7 +3,7 @@
PortSystem 1.0
name bali-phy
-version 2.1.0
+version 2.1.1
revision 1
description Bayesian Alignment and Phylogeny estimation
long_description BAli-Phy can estimate phylogenetic trees from sequence data when the alignment \
@@ -18,7 +18,7 @@
homepage http://www.biomath.ucla.edu/msuchard/bali-phy/
master_sites ${homepage}
-checksums sha1 0fd83d876d2ef1d0f2676c14ad10ff93621a8530
+checksums sha1 e72073a1c5b05c797668e476bfd8517594f074e6
patchfiles configure.patch scripts.patch src-tools-draw-tree.patch
@@ -26,6 +26,7 @@
depends_build port:pkgconfig
configure.args --with-system-boost --enable-cairo
+configure.env CFLAGS=-DBOOST_FILESYSTEM_VERSION=2 CXXFLAGS=-DBOOST_FILESYSTEM_VERSION=2
variant no_cairo description {disable drawing routines} {
depends_lib-delete path:lib/pkgconfig/cairo.pc:cairo
Modified: trunk/dports/science/bali-phy/files/configure.patch
===================================================================
--- trunk/dports/science/bali-phy/files/configure.patch 2011-08-29 19:52:06 UTC (rev 83326)
+++ trunk/dports/science/bali-phy/files/configure.patch 2011-08-29 20:33:48 UTC (rev 83327)
@@ -1,6 +1,6 @@
---- configure 2010-07-30 14:20:13.000000000 -0400
-+++ configure 2010-07-30 14:20:22.000000000 -0400
-@@ -6299,7 +6299,7 @@
+--- configure.orig 2011-08-29 16:13:55.000000000 -0400
++++ configure 2011-08-29 16:19:39.000000000 -0400
+@@ -6466,7 +6466,7 @@
$as_echo_n "(cached) " >&6
else
ac_check_lib_save_LIBS=$LIBS
@@ -9,7 +9,7 @@
cat confdefs.h - <<_ACEOF >conftest.$ac_ext
/* end confdefs.h. */
-@@ -6330,13 +6330,13 @@
+@@ -6496,10 +6496,10 @@
#define `$as_echo "HAVE_LIBboost_filesystem${BOOST_SUFFIX}" | $as_tr_cpp` 1
_ACEOF
@@ -21,12 +21,17 @@
+ echo "Error: I can't find the boost_filesystem library! (-lboost_filesystem${BOOST_SUFFIX} -lboost_system${BOOST_SUFFIX})" ; exit 1
fi
+ if test "$use_mpi" != no ; then
+@@ -6591,7 +6591,7 @@
+
+ fi
+
-boost_libs="-lboost_program_options${BOOST_SUFFIX} -lboost_filesystem${BOOST_SUFFIX}";
+boost_libs="-lboost_program_options${BOOST_SUFFIX} -lboost_filesystem${BOOST_SUFFIX} -lboost_system${BOOST_SUFFIX}";
- { $as_echo "$as_me:${as_lineno-$LINENO}: checking include/compile/link for the BOOST program_options library" >&5
- $as_echo_n "checking include/compile/link for the BOOST program_options library... " >&6; }
-@@ -6397,7 +6397,7 @@
+ { $as_echo "$as_me:${as_lineno-$LINENO}: checking include/compile/link for the BOOST.program_options library" >&5
+ $as_echo_n "checking include/compile/link for the BOOST.program_options library... " >&6; }
+@@ -6681,7 +6681,7 @@
echo " * Not using system BOOST libraries: we'll build our own."
boost_includes="-isystem \$(top_srcdir)/boost/include"
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