[94916] trunk/dports/science

[jmr at macports.org]

Revision: 94916
          https://trac.macports.org/changeset/94916
Author:   jmr at macports.org
Date:     2012-07-02 04:56:23 -0700 (Mon, 02 Jul 2012)
Log Message:
-----------
New port: cell-id, Microscopy based cytometry segmentation software (#32448)

Added Paths:
-----------
    trunk/dports/science/cell-id/
    trunk/dports/science/cell-id/Portfile

Added: trunk/dports/science/cell-id/Portfile
===================================================================
--- trunk/dports/science/cell-id/Portfile	                        (rev 0)
+++ trunk/dports/science/cell-id/Portfile	2012-07-02 11:56:23 UTC (rev 94916)
@@ -0,0 +1,54 @@
+# -*- coding: utf-8; mode: tcl; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- vim:fenc=utf-8:ft=tcl:et:sw=4:ts=4:sts=4
+# $Id$
+
+PortSystem          1.0
+
+name                cell-id
+version             1.4.6
+categories          science biology
+license             LGPL-2.1+
+platforms           darwin
+maintainers         fbmc.fcen.uba.ar:abush
+description         Microscopy based cytometry segmentation software
+long_description    Cell-ID is a command line software that segments bright field \
+                    microscopy images of yeast and mammalian cells, tracks cells \
+                    over time and quantifies morphological and fluorescence \
+                    features for each cell.
+homepage            http://sourceforge.net/projects/cell-id
+master_sites        sourceforge:project/cell-id
+distname            cell_id_${version}
+use_zip             yes
+
+checksums           md5     add16051f92ff4b95ba73619cfd33036 \
+                    sha1    d3e67b45af06d136b137ac2fca1a529e0f5f803b \
+                    rmd160  1406f30acdd62d87f1135eaa5b8e791663237c70
+
+depends_lib         port:glib2 \
+                    port:tiff
+
+post-patch {
+    reinplace "s|-static|${configure.cflags} ${configure.cc_archflags}|g" ${worksrcpath}/Makefile
+    reinplace "s|-I/local|-I${prefix}|g" ${worksrcpath}/Makefile
+    reinplace "s|-L/local/lib|-I${prefix}/lib/glib-2.0/include -L${prefix}/lib|g" ${worksrcpath}/Makefile
+    reinplace "s|rm cell|rm -f cell|g" ${worksrcpath}/Makefile
+    reinplace "s|gcc|\$(CC)|g" ${worksrcpath}/Makefile
+}
+
+use_configure       no
+
+pre-build {
+    system -W ${worksrcpath} "${build.cmd} clean"
+}
+
+build.target        cell
+build.env           CC="${configure.cc}"
+use_parallel_build  no
+
+destroot {
+    xinstall ${worksrcpath}/cell ${destroot}${prefix}/bin/cell
+    xinstall -d ${destroot}${prefix}/share/doc/${name}
+    xinstall -m 644 -W ${worksrcpath} Cell-ID-help.txt GNU_Lesser_General_Public_License.txt \
+        README.txt cell_id_description_of_output_file_R.txt \
+        cell_id_description_of_output_files_PAW.txt parameters.txt \
+        ${destroot}${prefix}/share/doc/${name}
+}


Property changes on: trunk/dports/science/cell-id/Portfile
___________________________________________________________________
Added: svn:keywords
   + Id
Added: svn:eol-style
   + native
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