[101867] trunk/dports
eborisch at macports.org
eborisch at macports.org
Sun Jan 20 12:36:27 PST 2013
Revision: 101867
https://trac.macports.org/changeset/101867
Author: eborisch at macports.org
Date: 2013-01-20 12:36:27 -0800 (Sun, 20 Jan 2013)
Log Message:
-----------
hdf5-18: Upgrade to 1.8.10:
* blacklist llvm-gcc-4.2 (generated code fails type conversion tests
* rev-bump all dependencies as hdf5 complains when there is a compiled / active version mismatch
Closes #37686.
Modified Paths:
--------------
trunk/dports/gis/gdal/Portfile
trunk/dports/graphics/field3d/Portfile
trunk/dports/graphics/vigra/Portfile
trunk/dports/math/gnudatalanguage/Portfile
trunk/dports/math/octave/Portfile
trunk/dports/math/octave-devel/Portfile
trunk/dports/math/petsc/Portfile
trunk/dports/math/shogun/Portfile
trunk/dports/perl/p5-pdl/Portfile
trunk/dports/python/py-h5py/Portfile
trunk/dports/python/py-tables/Portfile
trunk/dports/science/H5Part/Portfile
trunk/dports/science/alps/Portfile
trunk/dports/science/armadillo/Portfile
trunk/dports/science/bob/Portfile
trunk/dports/science/flann/Portfile
trunk/dports/science/h4h5tools/Portfile
trunk/dports/science/h5utils/Portfile
trunk/dports/science/hdf5-18/Portfile
trunk/dports/science/hdfeos5/Portfile
trunk/dports/science/nco/Portfile
trunk/dports/science/ncview/Portfile
trunk/dports/science/netcdf/Portfile
trunk/dports/science/silo/Portfile
trunk/dports/science/splash/Portfile
trunk/dports/science/swarm/Portfile
trunk/dports/science/vapor/Portfile
trunk/dports/science/wgrib2/Portfile
trunk/dports/science/yorick-hdf5/Portfile
Modified: trunk/dports/gis/gdal/Portfile
===================================================================
--- trunk/dports/gis/gdal/Portfile 2013-01-20 20:28:02 UTC (rev 101866)
+++ trunk/dports/gis/gdal/Portfile 2013-01-20 20:36:27 UTC (rev 101867)
@@ -5,6 +5,7 @@
name gdal
version 1.9.2
+revision 1
categories gis
license MIT BSD
platforms darwin
Modified: trunk/dports/graphics/field3d/Portfile
===================================================================
--- trunk/dports/graphics/field3d/Portfile 2013-01-20 20:28:02 UTC (rev 101866)
+++ trunk/dports/graphics/field3d/Portfile 2013-01-20 20:36:27 UTC (rev 101867)
@@ -6,6 +6,7 @@
github.setup imageworks Field3D 1.3.2 v
name field3d
+revision 1
categories graphics
maintainers blair
license BSD
Modified: trunk/dports/graphics/vigra/Portfile
===================================================================
--- trunk/dports/graphics/vigra/Portfile 2013-01-20 20:28:02 UTC (rev 101866)
+++ trunk/dports/graphics/vigra/Portfile 2013-01-20 20:36:27 UTC (rev 101867)
@@ -5,7 +5,7 @@
name vigra
version 1.8.0
-revision 1
+revision 2
categories graphics
platforms darwin
maintainers gmail.com:benjamin.seppke
Modified: trunk/dports/math/gnudatalanguage/Portfile
===================================================================
--- trunk/dports/math/gnudatalanguage/Portfile 2013-01-20 20:28:02 UTC (rev 101866)
+++ trunk/dports/math/gnudatalanguage/Portfile 2013-01-20 20:36:27 UTC (rev 101867)
@@ -5,7 +5,7 @@
name gnudatalanguage
version 0.9.2
-revision 3
+revision 4
epoch 1
categories math science
maintainers takeshi igf.fuw.edu.pl:slayoo
Modified: trunk/dports/math/octave/Portfile
===================================================================
--- trunk/dports/math/octave/Portfile 2013-01-20 20:28:02 UTC (rev 101866)
+++ trunk/dports/math/octave/Portfile 2013-01-20 20:36:27 UTC (rev 101867)
@@ -5,7 +5,7 @@
name octave
version 3.2.4
-revision 10
+revision 11
conflicts octave-devel
categories math science
license GPL-3+
Modified: trunk/dports/math/octave-devel/Portfile
===================================================================
--- trunk/dports/math/octave-devel/Portfile 2013-01-20 20:28:02 UTC (rev 101866)
+++ trunk/dports/math/octave-devel/Portfile 2013-01-20 20:36:27 UTC (rev 101867)
@@ -5,6 +5,7 @@
name octave-devel
version 3.6.3
+revision 1
conflicts octave
categories math science
maintainers michaelld openmaintainer
Modified: trunk/dports/math/petsc/Portfile
===================================================================
--- trunk/dports/math/petsc/Portfile 2013-01-20 20:28:02 UTC (rev 101866)
+++ trunk/dports/math/petsc/Portfile 2013-01-20 20:36:27 UTC (rev 101867)
@@ -6,6 +6,7 @@
name petsc
version 3.3-p5
+revision 1
categories math science
maintainers mmoll
description Portable, Extensible Toolkit for Scientific Computation
Modified: trunk/dports/math/shogun/Portfile
===================================================================
--- trunk/dports/math/shogun/Portfile 2013-01-20 20:28:02 UTC (rev 101866)
+++ trunk/dports/math/shogun/Portfile 2013-01-20 20:36:27 UTC (rev 101867)
@@ -6,6 +6,7 @@
categories math science
name shogun
version 0.9.3
+revision 1
set branch [join [lrange [split ${version} .] 0 1] .]
license GPL-3
maintainers jameskyle
Modified: trunk/dports/perl/p5-pdl/Portfile
===================================================================
--- trunk/dports/perl/p5-pdl/Portfile 2013-01-20 20:28:02 UTC (rev 101866)
+++ trunk/dports/perl/p5-pdl/Portfile 2013-01-20 20:36:27 UTC (rev 101867)
@@ -6,7 +6,7 @@
perl5.branches 5.8 5.10 5.12 5.14 5.16
perl5.setup PDL 2.4.6
-revision 3
+revision 4
maintainers saao.ac.za:tim
description Perl Data Language - scientific computing capability for perl
long_description The perlDL project aims to turn perl into an efficient numerical \
Modified: trunk/dports/python/py-h5py/Portfile
===================================================================
--- trunk/dports/python/py-h5py/Portfile 2013-01-20 20:28:02 UTC (rev 101866)
+++ trunk/dports/python/py-h5py/Portfile 2013-01-20 20:36:27 UTC (rev 101867)
@@ -8,7 +8,7 @@
version 2.1.1
# h5py needs to be re-built after hdf5-18 upgrades
-revision 1
+revision 2
checksums \
rmd160 9884028e5f7b768f77a1c808c10dd6af4414fb01 \
Modified: trunk/dports/python/py-tables/Portfile
===================================================================
--- trunk/dports/python/py-tables/Portfile 2013-01-20 20:28:02 UTC (rev 101866)
+++ trunk/dports/python/py-tables/Portfile 2013-01-20 20:36:27 UTC (rev 101867)
@@ -6,7 +6,7 @@
set realname tables
name py-${realname}
version 2.4.0
-revision 1
+revision 2
python.versions 26 27
python.default_version 27
categories python science
Modified: trunk/dports/science/H5Part/Portfile
===================================================================
--- trunk/dports/science/H5Part/Portfile 2013-01-20 20:28:02 UTC (rev 101866)
+++ trunk/dports/science/H5Part/Portfile 2013-01-20 20:36:27 UTC (rev 101867)
@@ -5,6 +5,7 @@
name H5Part
version 1.6.6
+revision 1
categories science
maintainers lbl.gov:ghweber
license BSD
Modified: trunk/dports/science/alps/Portfile
===================================================================
--- trunk/dports/science/alps/Portfile 2013-01-20 20:28:02 UTC (rev 101866)
+++ trunk/dports/science/alps/Portfile 2013-01-20 20:36:27 UTC (rev 101867)
@@ -7,7 +7,7 @@
name alps
version 2.1.1
-revision 1
+revision 2
categories science
platforms darwin
maintainers gmail.com:gamperl
Modified: trunk/dports/science/armadillo/Portfile
===================================================================
--- trunk/dports/science/armadillo/Portfile 2013-01-20 20:28:02 UTC (rev 101866)
+++ trunk/dports/science/armadillo/Portfile 2013-01-20 20:36:27 UTC (rev 101867)
@@ -6,6 +6,7 @@
name armadillo
version 3.4.0
+revision 1
categories science
platforms darwin
maintainers gmail.com:christian.frisson openmaintainer
Modified: trunk/dports/science/bob/Portfile
===================================================================
--- trunk/dports/science/bob/Portfile 2013-01-20 20:28:02 UTC (rev 101866)
+++ trunk/dports/science/bob/Portfile 2013-01-20 20:36:27 UTC (rev 101867)
@@ -8,6 +8,7 @@
github.setup idiap bob 1.1.2 v
set soversion 1.1
+revision 1
categories science math devel
platforms darwin
maintainers idiap.ch:andre.anjos \
Modified: trunk/dports/science/flann/Portfile
===================================================================
--- trunk/dports/science/flann/Portfile 2013-01-20 20:28:02 UTC (rev 101866)
+++ trunk/dports/science/flann/Portfile 2013-01-20 20:36:27 UTC (rev 101867)
@@ -5,6 +5,7 @@
name flann
version 1.8.1
+revision 1
categories science devel
maintainers mmoll
description Fast Library for Approximate Nearest Neighbors
Modified: trunk/dports/science/h4h5tools/Portfile
===================================================================
--- trunk/dports/science/h4h5tools/Portfile 2013-01-20 20:28:02 UTC (rev 101866)
+++ trunk/dports/science/h4h5tools/Portfile 2013-01-20 20:36:27 UTC (rev 101867)
@@ -4,6 +4,7 @@
name h4h5tools
version 2.2.1
+revision 1
categories science
platforms darwin
maintainers dal.ca:tom.duck openmaintainer
Modified: trunk/dports/science/h5utils/Portfile
===================================================================
--- trunk/dports/science/h5utils/Portfile 2013-01-20 20:28:02 UTC (rev 101866)
+++ trunk/dports/science/h5utils/Portfile 2013-01-20 20:36:27 UTC (rev 101867)
@@ -5,7 +5,7 @@
name h5utils
version 1.12.1
-revision 1
+revision 2
categories science
platforms darwin
maintainers ece.pdx.edu:higginja
Modified: trunk/dports/science/hdf5-18/Portfile
===================================================================
--- trunk/dports/science/hdf5-18/Portfile 2013-01-20 20:28:02 UTC (rev 101866)
+++ trunk/dports/science/hdf5-18/Portfile 2013-01-20 20:36:27 UTC (rev 101867)
@@ -7,8 +7,7 @@
set realname hdf5
name ${realname}-18
-version 1.8.9
-revision 2
+version 1.8.10
categories science
maintainers mmoll openmaintainer
@@ -30,8 +29,8 @@
ftp://ftp.hdfgroup.org/HDF5/current/src/ \
ftp://ftp.hdfgroup.org/HDF5/prev-releases/hdf5-${version}/src/
checksums \
- rmd160 4c1a4160fbac6befa15b2dc039f20858c31db37d \
- sha256 fafe54856b00f0d6531629f66e2c476ab6ee03458803088f270bbfc4a60966c7
+ rmd160 78fe33ae4205068f7bddeb98f0e7a2c77310b651 \
+ sha256 fa6e6b37b7976edac860732b87c50370e3beba3ae784d05f16f298c033a45a44
distname ${realname}-${version}
use_bzip2 yes
depends_lib port:zlib
@@ -40,6 +39,10 @@
# nawk: bailing out at source line 273
conflicts_build nawk
+# llvm-gcc-4.2 produced code fails type conversion tests
+# Upstream suggestion is use -O0. Clang-produced code passes all tests.
+compiler.blacklist llvm-gcc-4.2
+
configure.args --with-zlib=yes --enable-filters=all \
--enable-production --disable-fortran \
--disable-cxx --enable-shared --enable-static \
Modified: trunk/dports/science/hdfeos5/Portfile
===================================================================
--- trunk/dports/science/hdfeos5/Portfile 2013-01-20 20:28:02 UTC (rev 101866)
+++ trunk/dports/science/hdfeos5/Portfile 2013-01-20 20:36:27 UTC (rev 101867)
@@ -5,7 +5,7 @@
name hdfeos5
version 1.14
-revision 2
+revision 3
categories science
platforms darwin
license public-domain
Modified: trunk/dports/science/nco/Portfile
===================================================================
--- trunk/dports/science/nco/Portfile 2013-01-20 20:28:02 UTC (rev 101866)
+++ trunk/dports/science/nco/Portfile 2013-01-20 20:36:27 UTC (rev 101867)
@@ -5,6 +5,7 @@
name nco
version 4.2.3
+revision 1
platforms darwin
maintainers takeshi
license GPL-3
Modified: trunk/dports/science/ncview/Portfile
===================================================================
--- trunk/dports/science/ncview/Portfile 2013-01-20 20:28:02 UTC (rev 101866)
+++ trunk/dports/science/ncview/Portfile 2013-01-20 20:36:27 UTC (rev 101867)
@@ -5,6 +5,7 @@
name ncview
version 2.1.1
+revision 1
maintainers nomaintainer
platforms darwin
categories science
Modified: trunk/dports/science/netcdf/Portfile
===================================================================
--- trunk/dports/science/netcdf/Portfile 2013-01-20 20:28:02 UTC (rev 101866)
+++ trunk/dports/science/netcdf/Portfile 2013-01-20 20:36:27 UTC (rev 101867)
@@ -6,6 +6,7 @@
name netcdf
epoch 2
version 4.2.1.1
+revision 1
maintainers takeshi openmaintainer
platforms darwin
categories science
Modified: trunk/dports/science/silo/Portfile
===================================================================
--- trunk/dports/science/silo/Portfile 2013-01-20 20:28:02 UTC (rev 101866)
+++ trunk/dports/science/silo/Portfile 2013-01-20 20:36:27 UTC (rev 101867)
@@ -5,7 +5,7 @@
name silo
version 4.8
-revision 1
+revision 2
categories science
platforms darwin
maintainers nomaintainer
Modified: trunk/dports/science/splash/Portfile
===================================================================
--- trunk/dports/science/splash/Portfile 2013-01-20 20:28:02 UTC (rev 101866)
+++ trunk/dports/science/splash/Portfile 2013-01-20 20:36:27 UTC (rev 101867)
@@ -5,7 +5,7 @@
name splash
version 2.2.0
-revision 0
+revision 1
categories science graphics
platforms darwin
maintainers monash.edu:daniel.price
Modified: trunk/dports/science/swarm/Portfile
===================================================================
--- trunk/dports/science/swarm/Portfile 2013-01-20 20:28:02 UTC (rev 101866)
+++ trunk/dports/science/swarm/Portfile 2013-01-20 20:36:27 UTC (rev 101867)
@@ -5,7 +5,7 @@
name swarm
version 2.4.1
-revision 2
+revision 3
categories science
maintainers nomaintainer
license GPL-2
Modified: trunk/dports/science/vapor/Portfile
===================================================================
--- trunk/dports/science/vapor/Portfile 2013-01-20 20:28:02 UTC (rev 101866)
+++ trunk/dports/science/vapor/Portfile 2013-01-20 20:36:27 UTC (rev 101867)
@@ -4,7 +4,7 @@
PortSystem 1.0
name vapor
version 1.5.2
-revision 1
+revision 2
categories science
maintainers takeshi
description interactive 3D scientific visualization environment
Modified: trunk/dports/science/wgrib2/Portfile
===================================================================
--- trunk/dports/science/wgrib2/Portfile 2013-01-20 20:28:02 UTC (rev 101866)
+++ trunk/dports/science/wgrib2/Portfile 2013-01-20 20:36:27 UTC (rev 101867)
@@ -5,7 +5,7 @@
name wgrib2
version 1.9.6a
-revision 5
+revision 6
platforms darwin
maintainers takeshi
license public-domain
Modified: trunk/dports/science/yorick-hdf5/Portfile
===================================================================
--- trunk/dports/science/yorick-hdf5/Portfile 2013-01-20 20:28:02 UTC (rev 101866)
+++ trunk/dports/science/yorick-hdf5/Portfile 2013-01-20 20:36:27 UTC (rev 101867)
@@ -6,6 +6,7 @@
set uname hdf5
github.setup frigaut yorick-${uname} 0.8.0
+revision 1
license GPL-2+
categories science yorick
platforms darwin
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