[108663] trunk/dports
mmoll at macports.org
mmoll at macports.org
Mon Jul 29 20:28:46 PDT 2013
Revision: 108663
https://trac.macports.org/changeset/108663
Author: mmoll at macports.org
Date: 2013-07-29 20:28:46 -0700 (Mon, 29 Jul 2013)
Log Message:
-----------
science/hdf5-18: update to 1.8.11, rev. bump all ports that depend on it, since hdf5-18 is very particular about versions when reading hdf5 files even if the dylib version hasn't changed. closes #39893
Modified Paths:
--------------
trunk/dports/archivers/blosc/Portfile
trunk/dports/devel/lua-numlua/Portfile
trunk/dports/gis/gdal/Portfile
trunk/dports/graphics/field3d/Portfile
trunk/dports/graphics/vigra/Portfile
trunk/dports/math/gnudatalanguage/Portfile
trunk/dports/math/octave/Portfile
trunk/dports/math/octave-devel/Portfile
trunk/dports/math/petsc/Portfile
trunk/dports/math/shogun/Portfile
trunk/dports/perl/p5-pdl/Portfile
trunk/dports/python/py-h5py/Portfile
trunk/dports/python/py-stfio/Portfile
trunk/dports/python/py-tables/Portfile
trunk/dports/science/H5Part/Portfile
trunk/dports/science/alps/Portfile
trunk/dports/science/armadillo/Portfile
trunk/dports/science/bob/Portfile
trunk/dports/science/cdo/Portfile
trunk/dports/science/flann/Portfile
trunk/dports/science/h4h5tools/Portfile
trunk/dports/science/h5utils/Portfile
trunk/dports/science/hdf5-18/Portfile
trunk/dports/science/hdfeos5/Portfile
trunk/dports/science/nco/Portfile
trunk/dports/science/ncview/Portfile
trunk/dports/science/netcdf/Portfile
trunk/dports/science/netcdf-cxx/Portfile
trunk/dports/science/netcdf-cxx4/Portfile
trunk/dports/science/netcdf-fortran/Portfile
trunk/dports/science/silo/Portfile
trunk/dports/science/splash/Portfile
trunk/dports/science/stimfit/Portfile
trunk/dports/science/swarm/Portfile
trunk/dports/science/vapor/Portfile
trunk/dports/science/wgrib2/Portfile
trunk/dports/science/yorick-hdf5/Portfile
Modified: trunk/dports/archivers/blosc/Portfile
===================================================================
--- trunk/dports/archivers/blosc/Portfile 2013-07-30 01:05:55 UTC (rev 108662)
+++ trunk/dports/archivers/blosc/Portfile 2013-07-30 03:28:46 UTC (rev 108663)
@@ -6,7 +6,7 @@
name blosc
version 1.2.3
-revision 0
+revision 1
categories archivers devel
platforms darwin
license MIT
Modified: trunk/dports/devel/lua-numlua/Portfile
===================================================================
--- trunk/dports/devel/lua-numlua/Portfile 2013-07-30 01:05:55 UTC (rev 108662)
+++ trunk/dports/devel/lua-numlua/Portfile 2013-07-30 03:28:46 UTC (rev 108663)
@@ -4,7 +4,7 @@
PortGroup github 1.0
github.setup carvalho numlua 0.3
-revision 1
+revision 2
name lua-numlua
license MIT
categories devel
Modified: trunk/dports/gis/gdal/Portfile
===================================================================
--- trunk/dports/gis/gdal/Portfile 2013-07-30 01:05:55 UTC (rev 108662)
+++ trunk/dports/gis/gdal/Portfile 2013-07-30 03:28:46 UTC (rev 108663)
@@ -5,7 +5,7 @@
name gdal
version 1.10.0
-revision 1
+revision 2
categories gis
license MIT BSD
platforms darwin
Modified: trunk/dports/graphics/field3d/Portfile
===================================================================
--- trunk/dports/graphics/field3d/Portfile 2013-07-30 01:05:55 UTC (rev 108662)
+++ trunk/dports/graphics/field3d/Portfile 2013-07-30 03:28:46 UTC (rev 108663)
@@ -6,7 +6,7 @@
github.setup imageworks Field3D 1.3.2 v
name field3d
-revision 1
+revision 2
categories graphics
maintainers blair
license BSD
Modified: trunk/dports/graphics/vigra/Portfile
===================================================================
--- trunk/dports/graphics/vigra/Portfile 2013-07-30 01:05:55 UTC (rev 108662)
+++ trunk/dports/graphics/vigra/Portfile 2013-07-30 03:28:46 UTC (rev 108663)
@@ -5,7 +5,7 @@
name vigra
version 1.8.0
-revision 4
+revision 5
categories graphics
platforms darwin
maintainers gmail.com:benjamin.seppke
Modified: trunk/dports/math/gnudatalanguage/Portfile
===================================================================
--- trunk/dports/math/gnudatalanguage/Portfile 2013-07-30 01:05:55 UTC (rev 108662)
+++ trunk/dports/math/gnudatalanguage/Portfile 2013-07-30 03:28:46 UTC (rev 108663)
@@ -6,7 +6,7 @@
name gnudatalanguage
version 0.9.3
-revision 1
+revision 2
epoch 1
categories math science
maintainers takeshi
Modified: trunk/dports/math/octave/Portfile
===================================================================
--- trunk/dports/math/octave/Portfile 2013-07-30 01:05:55 UTC (rev 108662)
+++ trunk/dports/math/octave/Portfile 2013-07-30 03:28:46 UTC (rev 108663)
@@ -5,7 +5,7 @@
name octave
version 3.2.4
-revision 13
+revision 14
conflicts octave-devel
categories math science
license GPL-3+
Modified: trunk/dports/math/octave-devel/Portfile
===================================================================
--- trunk/dports/math/octave-devel/Portfile 2013-07-30 01:05:55 UTC (rev 108662)
+++ trunk/dports/math/octave-devel/Portfile 2013-07-30 03:28:46 UTC (rev 108663)
@@ -6,7 +6,7 @@
name octave-devel
version 3.6.4
-revision 5
+revision 6
conflicts octave
categories math science
maintainers michaelld openmaintainer
Modified: trunk/dports/math/petsc/Portfile
===================================================================
--- trunk/dports/math/petsc/Portfile 2013-07-30 01:05:55 UTC (rev 108662)
+++ trunk/dports/math/petsc/Portfile 2013-07-30 03:28:46 UTC (rev 108663)
@@ -6,7 +6,7 @@
name petsc
version 3.3-p6
-revision 1
+revision 2
categories math science
maintainers mmoll
description Portable, Extensible Toolkit for Scientific Computation
Modified: trunk/dports/math/shogun/Portfile
===================================================================
--- trunk/dports/math/shogun/Portfile 2013-07-30 01:05:55 UTC (rev 108662)
+++ trunk/dports/math/shogun/Portfile 2013-07-30 03:28:46 UTC (rev 108663)
@@ -6,7 +6,7 @@
name shogun
version 2.1.0
set branch [join [lrange [split ${version} .] 0 1] .]
-revision 1
+revision 2
categories-append science
platforms darwin
license GPL-3
Modified: trunk/dports/perl/p5-pdl/Portfile
===================================================================
--- trunk/dports/perl/p5-pdl/Portfile 2013-07-30 01:05:55 UTC (rev 108662)
+++ trunk/dports/perl/p5-pdl/Portfile 2013-07-30 03:28:46 UTC (rev 108663)
@@ -6,6 +6,7 @@
perl5.branches 5.8 5.10 5.12 5.14 5.16
perl5.setup PDL 2.4.11
+revision 1
maintainers saao.ac.za:tim
license Artistic GPL-2
description Perl Data Language - scientific computing capability for perl
Modified: trunk/dports/python/py-h5py/Portfile
===================================================================
--- trunk/dports/python/py-h5py/Portfile 2013-07-30 01:05:55 UTC (rev 108662)
+++ trunk/dports/python/py-h5py/Portfile 2013-07-30 03:28:46 UTC (rev 108663)
@@ -6,6 +6,7 @@
name py-h5py
version 2.1.3
+revision 1
# h5py needs to be re-built after hdf5-18 upgrades
revision 0
Modified: trunk/dports/python/py-stfio/Portfile
===================================================================
--- trunk/dports/python/py-stfio/Portfile 2013-07-30 01:05:55 UTC (rev 108662)
+++ trunk/dports/python/py-stfio/Portfile 2013-07-30 03:28:46 UTC (rev 108663)
@@ -6,6 +6,7 @@
name py-stfio
version 0.12.4
+revision 1
categories python science
platforms darwin
license GPL-2
Modified: trunk/dports/python/py-tables/Portfile
===================================================================
--- trunk/dports/python/py-tables/Portfile 2013-07-30 01:05:55 UTC (rev 108662)
+++ trunk/dports/python/py-tables/Portfile 2013-07-30 03:28:46 UTC (rev 108663)
@@ -7,7 +7,7 @@
set realname tables
name py-${realname}
version 3.0.0
-revision 0
+revision 1
categories-append science
platforms darwin
license BSD
Modified: trunk/dports/science/H5Part/Portfile
===================================================================
--- trunk/dports/science/H5Part/Portfile 2013-07-30 01:05:55 UTC (rev 108662)
+++ trunk/dports/science/H5Part/Portfile 2013-07-30 03:28:46 UTC (rev 108663)
@@ -5,7 +5,7 @@
name H5Part
version 1.6.6
-revision 1
+revision 2
categories science
maintainers lbl.gov:ghweber
license BSD
Modified: trunk/dports/science/alps/Portfile
===================================================================
--- trunk/dports/science/alps/Portfile 2013-07-30 01:05:55 UTC (rev 108662)
+++ trunk/dports/science/alps/Portfile 2013-07-30 03:28:46 UTC (rev 108663)
@@ -7,7 +7,7 @@
name alps
version 2.1.1
-revision 2
+revision 3
categories science
platforms darwin
maintainers gmail.com:gamperl
Modified: trunk/dports/science/armadillo/Portfile
===================================================================
--- trunk/dports/science/armadillo/Portfile 2013-07-30 01:05:55 UTC (rev 108662)
+++ trunk/dports/science/armadillo/Portfile 2013-07-30 03:28:46 UTC (rev 108663)
@@ -6,7 +6,7 @@
name armadillo
version 3.4.0
-revision 1
+revision 2
categories science
platforms darwin
maintainers gmail.com:christian.frisson openmaintainer
Modified: trunk/dports/science/bob/Portfile
===================================================================
--- trunk/dports/science/bob/Portfile 2013-07-30 01:05:55 UTC (rev 108662)
+++ trunk/dports/science/bob/Portfile 2013-07-30 03:28:46 UTC (rev 108663)
@@ -7,6 +7,7 @@
PortGroup active_variants 1.1
github.setup idiap bob 1.2.0 v
+revision 1
set soversion 1.2
categories science math devel
platforms darwin
Modified: trunk/dports/science/cdo/Portfile
===================================================================
--- trunk/dports/science/cdo/Portfile 2013-07-30 01:05:55 UTC (rev 108662)
+++ trunk/dports/science/cdo/Portfile 2013-07-30 03:28:46 UTC (rev 108663)
@@ -5,6 +5,7 @@
name cdo
version 1.6.1
+revision 1
platforms darwin
maintainers takeshi
license GPL-2
Modified: trunk/dports/science/flann/Portfile
===================================================================
--- trunk/dports/science/flann/Portfile 2013-07-30 01:05:55 UTC (rev 108662)
+++ trunk/dports/science/flann/Portfile 2013-07-30 03:28:46 UTC (rev 108663)
@@ -5,7 +5,7 @@
name flann
version 1.8.4
-revision 2
+revision 3
categories science devel
maintainers mmoll
description Fast Library for Approximate Nearest Neighbors
Modified: trunk/dports/science/h4h5tools/Portfile
===================================================================
--- trunk/dports/science/h4h5tools/Portfile 2013-07-30 01:05:55 UTC (rev 108662)
+++ trunk/dports/science/h4h5tools/Portfile 2013-07-30 03:28:46 UTC (rev 108663)
@@ -4,7 +4,7 @@
name h4h5tools
version 2.2.1
-revision 1
+revision 2
categories science
platforms darwin
maintainers dal.ca:tom.duck openmaintainer
Modified: trunk/dports/science/h5utils/Portfile
===================================================================
--- trunk/dports/science/h5utils/Portfile 2013-07-30 01:05:55 UTC (rev 108662)
+++ trunk/dports/science/h5utils/Portfile 2013-07-30 03:28:46 UTC (rev 108663)
@@ -5,7 +5,7 @@
name h5utils
version 1.12.1
-revision 2
+revision 3
categories science
platforms darwin
maintainers ece.pdx.edu:higginja
Modified: trunk/dports/science/hdf5-18/Portfile
===================================================================
--- trunk/dports/science/hdf5-18/Portfile 2013-07-30 01:05:55 UTC (rev 108662)
+++ trunk/dports/science/hdf5-18/Portfile 2013-07-30 03:28:46 UTC (rev 108663)
@@ -7,8 +7,8 @@
set realname hdf5
name ${realname}-18
-version 1.8.10
-revision 1
+version 1.8.11
+revision 0
categories science
maintainers mmoll openmaintainer
@@ -30,8 +30,9 @@
ftp://ftp.hdfgroup.org/HDF5/current/src/ \
ftp://ftp.hdfgroup.org/HDF5/prev-releases/hdf5-${version}/src/
checksums \
- rmd160 78fe33ae4205068f7bddeb98f0e7a2c77310b651 \
- sha256 fa6e6b37b7976edac860732b87c50370e3beba3ae784d05f16f298c033a45a44
+ rmd160 32786b19dd7356eecc95848d66e8e0843298ccbb \
+ sha256 5ea1ba82fc77350ee628b795ae6ede05feeaf1c6b437911a9478de456600cafb
+
distname ${realname}-${version}
use_bzip2 yes
depends_lib port:zlib
@@ -72,6 +73,12 @@
}
}
+post-destroot {
+ xinstall -d ${destroot}${prefix}/share/hdf5/
+ xinstall -m 444 ${worksrcpath}/COPYING\
+ ${destroot}${prefix}/share/hdf5/
+}
+
test.run yes
test.target check
@@ -119,10 +126,10 @@
configure.args-append --enable-threadsafe --with-pthread
}
-if {[ variant_isset threadsafe ] && ([ variant_isset cxx] ||
- [ variant_isset fortran]) ||
- ([ variant_isset mpich ] || [ variant_isset openmpi ]) &&
- ([ variant_isset cxx ] || [ variant_isset threadsafe ]) } {
+if {[ variant_isset threadsafe ] && ([ variant_isset cxx ] ||
+ [ variant_isset fortran ]) ||
+ ([ variant_isset mpich ] || [ variant_isset openmpi ]) &&
+ ([ variant_isset cxx ] || [ variant_isset threadsafe ]) } {
# Tell hdf5-18 to configure in this experimental configuration
configure.args-append --enable-unsupported
Modified: trunk/dports/science/hdfeos5/Portfile
===================================================================
--- trunk/dports/science/hdfeos5/Portfile 2013-07-30 01:05:55 UTC (rev 108662)
+++ trunk/dports/science/hdfeos5/Portfile 2013-07-30 03:28:46 UTC (rev 108663)
@@ -6,7 +6,7 @@
name hdfeos5
version 1.14
-revision 3
+revision 4
categories science
platforms darwin
license public-domain
Modified: trunk/dports/science/nco/Portfile
===================================================================
--- trunk/dports/science/nco/Portfile 2013-07-30 01:05:55 UTC (rev 108662)
+++ trunk/dports/science/nco/Portfile 2013-07-30 03:28:46 UTC (rev 108663)
@@ -5,7 +5,7 @@
name nco
version 4.3.3
-revision 1
+revision 2
platforms darwin
maintainers takeshi
license GPL-3
Modified: trunk/dports/science/ncview/Portfile
===================================================================
--- trunk/dports/science/ncview/Portfile 2013-07-30 01:05:55 UTC (rev 108662)
+++ trunk/dports/science/ncview/Portfile 2013-07-30 03:28:46 UTC (rev 108663)
@@ -5,7 +5,7 @@
name ncview
version 2.1.1
-revision 1
+revision 2
maintainers nomaintainer
platforms darwin
categories science
Modified: trunk/dports/science/netcdf/Portfile
===================================================================
--- trunk/dports/science/netcdf/Portfile 2013-07-30 01:05:55 UTC (rev 108662)
+++ trunk/dports/science/netcdf/Portfile 2013-07-30 03:28:46 UTC (rev 108663)
@@ -7,7 +7,7 @@
name netcdf
epoch 2
version 4.2.1.1
-revision 2
+revision 3
maintainers takeshi openmaintainer
platforms darwin
categories science
Modified: trunk/dports/science/netcdf-cxx/Portfile
===================================================================
--- trunk/dports/science/netcdf-cxx/Portfile 2013-07-30 01:05:55 UTC (rev 108662)
+++ trunk/dports/science/netcdf-cxx/Portfile 2013-07-30 03:28:46 UTC (rev 108663)
@@ -5,7 +5,7 @@
name netcdf-cxx
version 4.2
-revision 2
+revision 3
distname ${name}-${version}
maintainers takeshi openmaintainer
platforms darwin
Modified: trunk/dports/science/netcdf-cxx4/Portfile
===================================================================
--- trunk/dports/science/netcdf-cxx4/Portfile 2013-07-30 01:05:55 UTC (rev 108662)
+++ trunk/dports/science/netcdf-cxx4/Portfile 2013-07-30 03:28:46 UTC (rev 108663)
@@ -5,7 +5,7 @@
name netcdf-cxx4
version 4.2
-revision 1
+revision 2
distname ${name}-${version}
maintainers takeshi openmaintainer
platforms darwin
Modified: trunk/dports/science/netcdf-fortran/Portfile
===================================================================
--- trunk/dports/science/netcdf-fortran/Portfile 2013-07-30 01:05:55 UTC (rev 108662)
+++ trunk/dports/science/netcdf-fortran/Portfile 2013-07-30 03:28:46 UTC (rev 108663)
@@ -6,7 +6,7 @@
name netcdf-fortran
version 4.2
-revision 7
+revision 8
maintainers takeshi openmaintainer
platforms darwin
categories science
Modified: trunk/dports/science/silo/Portfile
===================================================================
--- trunk/dports/science/silo/Portfile 2013-07-30 01:05:55 UTC (rev 108662)
+++ trunk/dports/science/silo/Portfile 2013-07-30 03:28:46 UTC (rev 108663)
@@ -5,6 +5,7 @@
name silo
version 4.9
+revision 1
categories science
platforms darwin
maintainers nomaintainer
Modified: trunk/dports/science/splash/Portfile
===================================================================
--- trunk/dports/science/splash/Portfile 2013-07-30 01:05:55 UTC (rev 108662)
+++ trunk/dports/science/splash/Portfile 2013-07-30 03:28:46 UTC (rev 108663)
@@ -5,6 +5,7 @@
name splash
version 2.2.2
+revision 1
categories science graphics
platforms darwin
maintainers monash.edu:daniel.price
Modified: trunk/dports/science/stimfit/Portfile
===================================================================
--- trunk/dports/science/stimfit/Portfile 2013-07-30 01:05:55 UTC (rev 108662)
+++ trunk/dports/science/stimfit/Portfile 2013-07-30 03:28:46 UTC (rev 108663)
@@ -5,6 +5,7 @@
name stimfit
version 0.12.4
+revision 1
categories science
platforms darwin
license GPL-2
Modified: trunk/dports/science/swarm/Portfile
===================================================================
--- trunk/dports/science/swarm/Portfile 2013-07-30 01:05:55 UTC (rev 108662)
+++ trunk/dports/science/swarm/Portfile 2013-07-30 03:28:46 UTC (rev 108663)
@@ -5,7 +5,7 @@
name swarm
version 2.4.1
-revision 3
+revision 4
categories science
maintainers nomaintainer
license GPL-2
Modified: trunk/dports/science/vapor/Portfile
===================================================================
--- trunk/dports/science/vapor/Portfile 2013-07-30 01:05:55 UTC (rev 108662)
+++ trunk/dports/science/vapor/Portfile 2013-07-30 03:28:46 UTC (rev 108663)
@@ -4,7 +4,7 @@
PortSystem 1.0
name vapor
version 1.5.2
-revision 2
+revision 3
categories science
maintainers takeshi
description interactive 3D scientific visualization environment
Modified: trunk/dports/science/wgrib2/Portfile
===================================================================
--- trunk/dports/science/wgrib2/Portfile 2013-07-30 01:05:55 UTC (rev 108662)
+++ trunk/dports/science/wgrib2/Portfile 2013-07-30 03:28:46 UTC (rev 108663)
@@ -5,7 +5,7 @@
name wgrib2
version 1.9.8
-revision 1
+revision 2
platforms darwin
maintainers takeshi
license public-domain
Modified: trunk/dports/science/yorick-hdf5/Portfile
===================================================================
--- trunk/dports/science/yorick-hdf5/Portfile 2013-07-30 01:05:55 UTC (rev 108662)
+++ trunk/dports/science/yorick-hdf5/Portfile 2013-07-30 03:28:46 UTC (rev 108663)
@@ -6,7 +6,7 @@
set uname hdf5
github.setup frigaut yorick-${uname} 0.8.0
-revision 1
+revision 2
license GPL-2+
categories science yorick
platforms darwin
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