[113493] trunk/dports/science

[ryandesign at macports.org]

Revision: 113493
          https://trac.macports.org/changeset/113493
Author:   ryandesign at macports.org
Date:     2013-11-17 13:33:11 -0800 (Sun, 17 Nov 2013)
Log Message:
-----------
bedtools: new port, version 2.17.0 (#41407)

Added Paths:
-----------
    trunk/dports/science/bedtools/
    trunk/dports/science/bedtools/Portfile

Added: trunk/dports/science/bedtools/Portfile
===================================================================
--- trunk/dports/science/bedtools/Portfile	                        (rev 0)
+++ trunk/dports/science/bedtools/Portfile	2013-11-17 21:33:11 UTC (rev 113493)
@@ -0,0 +1,48 @@
+# -*- coding: utf-8; mode: tcl; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- vim:fenc=utf-8:ft=tcl:et:sw=4:ts=4:sts=4
+# $Id$
+
+PortSystem          1.0
+
+name                bedtools
+version             2.17.0
+categories          science
+platforms           darwin
+maintainers         gmail.com:vandervelde.ag openmaintainer
+license             GPL-2
+
+description         Utilities to perform basic operations on BED files
+
+long_description    The BEDTools utilities allow one to address common genomics \
+                    tasks such as finding feature overlaps and computing coverage. \
+                    The utilities are largely based on four widely-used file formats: \
+                    BED, GFF/GTF, VCF, and SAM/BAM.
+
+homepage            https://code.google.com/p/bedtools/
+master_sites        googlecode
+distname            BEDTools.v${version}
+worksrcdir          ${name}-${version}
+
+checksums           sha1    1b1de3c35394a423f9ad98a9957a8853b426a578 \
+                    rmd160  dccc7dc02dd0519977e30f83a0d49c9f9b0e0ca9 \
+                    sha256  6dcfacdcbccc968e872b81ba1f37a086b1bcc486571582ed595db717e924d0fe
+
+depends_lib         port:zlib
+
+use_configure       no
+
+variant universal {}
+
+configure.cflags-append -std=gnu89
+build.args          CC=${configure.cc} \
+                    CFLAGS="-g -Wall ${configure.cflags} [get_canonical_archflags cc]"
+use_parallel_build  no
+
+destroot {
+    eval xinstall -m 755 [glob ${worksrcpath}/bin/*] ${destroot}${prefix}/bin/
+    xinstall -d ${destroot}${prefix}/share/doc/${name}
+    xinstall -d ${destroot}${prefix}/share/${name}/genomes
+    xinstall -m 644 -W ${worksrcpath} \
+        LICENSE README.rst RELEASE_HISTORY \
+        ${destroot}${prefix}/share/doc/${name}
+    eval xinstall -m 644 [glob ${worksrcpath}/genomes/*] ${destroot}${prefix}/share/${name}/genomes/
+}


Property changes on: trunk/dports/science/bedtools/Portfile
___________________________________________________________________
Added: svn:keywords
   + Id
Added: svn:eol-style
   + native
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