[macports-ports] branch master updated (d8c7e17 -> e6904a6)

[Marcus Calhoun-Lopez]

Marcus Calhoun-Lopez (MarcusCalhoun-Lopez) pushed a change to branch master
in repository macports-ports.

    from d8c7e17  py-bcrypt: update to 3.1.6
     new 1c63176  bowtie2: change license from GPL-3 to GPL-3+
     new 526534d  bowtie2: add size to checksums
     new a708990  bowtie2: avoid comparing pointer and int with >
     new 0428b4b  bowtie2: set supported_archs and installs_libs
     new 956d314  bowtie2: respect MacPorts compiler flags
     new e6904a6  bowtie2: update version 2.2.9->2.3.4.3

The 6 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "add" were already present in the repository and have only
been added to this reference.


Summary of changes:
 science/bowtie2/Portfile                           | 40 +++++++--------
 .../bowtie2/files/patch-aligner_result.cpp.diff    | 14 +++++
 science/bowtie2/files/patch-src-Makefile.diff      | 59 ++++++++++++----------
 3 files changed, 66 insertions(+), 47 deletions(-)
 create mode 100644 science/bowtie2/files/patch-aligner_result.cpp.diff