[macports-ports] branch master updated (2c907f4 -> 7dd634c)

[Marcus Calhoun-Lopez]

Marcus Calhoun-Lopez (MarcusCalhoun-Lopez) pushed a change to branch master
in repository macports-ports.

    from 2c907f4  scummvm: glk engine only exists on -devel subport
     new 1ac84b9  samtools-0.1: new port
     new 186f7aa  seqan-1: new port
     new b03445a  tophat: assume maintainership (mcalhoun)
     new 148c5e0  tophat: use https for homepage
     new 7dd634c  tophat: update version 1.2.0->2.1.2

The 5 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "add" were already present in the repository and have only
been added to this reference.


Summary of changes:
 science/samtools-0.1/Portfile                  |  49 +++++++++++
 science/samtools-0.1/files/patch-Makefile.diff |  24 ++++++
 science/seqan-1/Portfile                       |  41 ++++++++++
 science/tophat/Portfile                        |  82 ++++++++++++++-----
 science/tophat/files/patch-cflags.diff         |  12 +++
 science/tophat/files/patch-cxx14.diff          |  12 +++
 science/tophat/files/patch-macports_libs.diff  | 108 +++++++++++++++++++++++++
 science/tophat/files/src_GList.hh.patch        |  29 -------
 8 files changed, 307 insertions(+), 50 deletions(-)
 create mode 100644 science/samtools-0.1/Portfile
 create mode 100644 science/samtools-0.1/files/patch-Makefile.diff
 create mode 100644 science/seqan-1/Portfile
 create mode 100644 science/tophat/files/patch-cflags.diff
 create mode 100644 science/tophat/files/patch-cxx14.diff
 create mode 100644 science/tophat/files/patch-macports_libs.diff
 delete mode 100644 science/tophat/files/src_GList.hh.patch