[macports-ports] branch master updated (509f692 -> 1d439aa)

[Marcus Calhoun-Lopez]

Marcus Calhoun-Lopez (MarcusCalhoun-Lopez) pushed a change to branch master
in repository macports-ports.

    from 509f692  dep: update to 0.5.4
     new 3acfa83  bowtie2: tweak livecheck to avoid "_new" in version
     new f9294a8  bowtie2: reformat Portfile
     new 4a55d55  bowtie2: allow greater control of Python version
     new e98650e  bowtie2: ensure all MacPorts flags are supported
     new ee6b378  bowtie2: update version 2.3.5.1->2.4.0
     new 1d439aa  mmg: update version 5.4.1->5.4.3

The 6 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "add" were already present in the repository and have only
been added to this reference.


Summary of changes:
 science/bowtie2/Portfile                      | 115 ++++++++++++++------------
 science/bowtie2/files/patch-src-Makefile.diff |  37 ++-------
 science/mmg/Portfile                          |   8 +-
 3 files changed, 73 insertions(+), 87 deletions(-)