[macports-ports] branch master updated (050de12189c -> 459fffe4a3c)
Ryan Carsten Schmidt
ryandesign at macports.org
Tue May 7 01:27:25 UTC 2024
Ryan Carsten Schmidt (ryandesign) pushed a change to branch master
in repository macports-ports.
from 050de12189c logtalk: update to 3.78.0
new f0f2a8059f2 R-BiocManager: update to 1.30.23
new 459fffe4a3c R: update bioconductor stuff to 3.19 release
The 2 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "add" were already present in the repository and have only
been added to this reference.
Summary of changes:
R/{R-yeastNagalakshmi => R-ALL}/Portfile | 15 +++++---
R/R-AnnotationDbi/Portfile | 13 +++----
R/R-AnnotationForge/Portfile | 13 +++----
R/R-AnnotationHub/Portfile | 12 +++---
R/R-BSgenome/Portfile | 14 ++++---
R/R-BayesKnockdown/Portfile | 11 +++---
R/R-BioNet/Portfile | 11 +++---
R/R-Biobase/Portfile | 25 +++++++++---
R/R-BiocBaseUtils/Portfile | 13 +++----
R/R-BiocCheck/Portfile | 26 +++++++------
R/R-BiocFileCache/Portfile | 13 +++----
R/R-BiocGenerics/Portfile | 17 ++++----
R/R-BiocIO/Portfile | 13 +++----
R/R-BiocManager/Portfile | 13 ++++---
R/R-BiocNeighbors/Portfile | 20 ++++++----
R/R-BiocParallel/Portfile | 34 ++++++++--------
.../files/patch-remove-unavailable-suggests.diff | 19 ++++-----
R/R-BiocPkgTools/Portfile | 11 +++---
R/R-BiocSingular/Portfile | 12 +++---
R/R-BiocStyle/Portfile | 16 ++++----
R/R-BiocVersion/Portfile | 12 +++---
R/R-Biostrings/Portfile | 12 +++---
R/R-ChemmineDrugs/Portfile | 1 +
R/R-ChemmineOB/Portfile | 23 ++++++++---
R/R-ChemmineOB/files/patch-fix-flags.diff | 8 ++--
R/R-ChemmineR/Portfile | 22 ++++++-----
R/R-ComplexHeatmap/Portfile | 11 +++---
R/R-DECIPHER/Portfile | 17 ++++----
R/R-DESeq2/Portfile | 14 ++++---
R/R-DNAcopy/Portfile | 11 +++---
R/R-DelayedArray/Portfile | 14 +++----
R/R-DelayedMatrixStats/Portfile | 23 ++++++-----
R/R-DelayedRandomArray/Portfile | 11 +++---
R/R-DirichletMultinomial/Portfile | 11 +++---
R/R-DynDoc/Portfile | 14 ++++---
R/R-EBImage/Portfile | 12 +++---
R/R-EnrichedHeatmap/Portfile | 12 +++---
R/R-ExperimentHub/Portfile | 12 +++---
R/R-GenomeInfoDb/Portfile | 17 ++++----
R/R-GenomeInfoDbData/Portfile | 11 +++---
R/R-GenomicAlignments/Portfile | 11 +++---
R/R-GenomicFeatures/Portfile | 13 +++----
R/R-GenomicRanges/Portfile | 13 +++----
R/R-HDF5Array/Portfile | 13 +++----
R/R-HilbertCurve/Portfile | 12 +++---
R/R-HilbertVis/Portfile | 12 +++---
R/R-IRanges/Portfile | 24 ++++++------
.../files/patch-remove-unavailable-suggests.diff | 19 ++++-----
R/R-Icens/Portfile | 13 +++----
R/R-InteractionSet/Portfile | 11 +++---
R/R-KEGGREST/Portfile | 16 ++++----
R/R-KEGGgraph/Portfile | 22 ++++++-----
R/R-MassSpecWavelet/Portfile | 14 ++++---
R/R-MatrixGenerics/Portfile | 13 +++----
R/R-MeSHDbi/Portfile | 11 +++---
R/R-MsCoreUtils/Portfile | 11 +++---
R/R-MultiAssayExperiment/Portfile | 16 ++++----
.../files/patch-no-maftools.diff | 23 ++++++-----
R/R-RBGL/Portfile | 21 +++++-----
R/R-RaggedExperiment/Portfile | 13 +++----
R/R-ResidualMatrix/Portfile | 11 +++---
R/R-Rgraphviz/Portfile | 13 ++++---
R/R-Rhdf5lib/Portfile | 11 +++---
R/R-Rhtslib/Portfile | 13 +++----
R/R-Rsamtools/Portfile | 16 ++++----
R/R-S4Arrays/Portfile | 13 +++----
R/R-S4Vectors/Portfile | 20 +++++-----
R/R-SPIA/Portfile | 17 ++++----
R/R-SQLDataFrame/Portfile | 39 ++++++++-----------
R/R-ScaledMatrix/Portfile | 11 +++---
R/R-SeqArray/Portfile | 11 +++---
R/R-ShortRead/Portfile | 22 ++++++-----
R/R-SingleCellExperiment/Portfile | 12 +++---
R/R-SparseArray/Portfile | 28 +++++++++-----
R/R-SparseArray/files/patch-disable-openmp.diff | 45 ++++++++++++++++++++++
R/R-Structstrings/Portfile | 40 +++++++++++++++++++
.../files/patch-no-tRNAscanImport.diff | 11 ++++++
R/R-SummarizedExperiment/Portfile | 13 +++----
R/R-TileDBArray/Portfile | 24 +++++++-----
R/R-UCSC.utils/Portfile | 34 ++++++++++++++++
R/R-VariantAnnotation/Portfile | 11 +++---
R/R-XVector/Portfile | 17 ++++----
R/R-XVector/files/patch-no-drosophila2probe.diff | 16 ++++----
R/R-annotate/Portfile | 11 +++---
R/R-apeglm/Portfile | 11 +++---
R/R-aroma.light/Portfile | 12 +++---
R/R-beachmat/Portfile | 11 +++---
R/R-bioDist/Portfile | 12 +++---
R/R-biobroom/Portfile | 11 +++---
R/R-biocViews/Portfile | 13 +++----
R/R-biocthis/Portfile | 17 ++++----
R/R-biomaRt/Portfile | 18 +++++----
R/R-biomaRt/files/patch-no-httptest2.diff | 11 ++++++
R/R-bluster/Portfile | 11 +++---
R/R-clustComp/Portfile | 11 +++---
R/R-csaw/Portfile | 11 +++---
R/R-dcanr/Portfile | 12 +++---
R/R-dir.expiry/Portfile | 11 +++---
R/R-edgeR/Portfile | 11 +++---
R/R-fmcsR/Portfile | 11 +++---
R/R-gdsfmt/Portfile | 11 +++---
R/R-genefilter/Portfile | 25 +++++++++---
R/R-ggtree/Portfile | 13 ++++---
R/R-ggtreeExtra/Portfile | 12 +++---
R/R-golubEsets/Portfile | 21 ++++++++++
R/R-graph/Portfile | 20 +++++-----
R/R-graphite/Portfile | 11 +++---
R/R-groHMM/Portfile | 11 +++---
R/R-impute/Portfile | 11 +++---
R/R-interactiveDisplayBase/Portfile | 14 ++++---
R/R-kebabs/Portfile | 11 +++---
R/R-limma/Portfile | 11 +++---
R/R-marray/Portfile | 11 +++---
R/R-metapod/Portfile | 22 ++++++-----
R/R-mixOmics/Portfile | 11 +++---
R/R-multtest/Portfile | 11 +++---
R/R-pcaMethods/Portfile | 11 +++---
R/R-preprocessCore/Portfile | 11 +++---
R/R-pwalign/Portfile | 28 ++++++++++++++
R/R-qvalue/Portfile | 11 +++---
R/R-rhdf5/Portfile | 19 +++++----
R/R-rhdf5filters/Portfile | 20 ++++++----
R/R-rsbml/Portfile | 21 +++++++---
R/R-rtracklayer/Portfile | 16 +++++---
R/R-sparseMatrixStats/Portfile | 13 +++----
R/R-ssize/Portfile | 11 +++---
R/R-survcomp/Portfile | 11 +++---
R/R-systemPipeR/Portfile | 21 ++++++----
R/R-systemPipeRdata/Portfile | 18 +++++----
R/R-tkWidgets/Portfile | 12 +++---
R/R-treeio/Portfile | 11 +++---
R/R-vsclust/Portfile | 11 +++---
R/R-widgetTools/Portfile | 14 ++++---
R/R-yeastNagalakshmi/Portfile | 11 +++---
R/R-zlibbioc/Portfile | 14 +++----
135 files changed, 1201 insertions(+), 852 deletions(-)
copy R/{R-yeastNagalakshmi => R-ALL}/Portfile (52%)
create mode 100644 R/R-SparseArray/files/patch-disable-openmp.diff
create mode 100644 R/R-Structstrings/Portfile
create mode 100644 R/R-Structstrings/files/patch-no-tRNAscanImport.diff
create mode 100644 R/R-UCSC.utils/Portfile
create mode 100644 R/R-biomaRt/files/patch-no-httptest2.diff
create mode 100644 R/R-golubEsets/Portfile
create mode 100644 R/R-pwalign/Portfile
More information about the macports-changes
mailing list