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<dt>Revision</dt> <dd><a href="http://trac.macports.org/changeset/47003">47003</a></dd>
<dt>Author</dt> <dd>snc@macports.org</dd>
<dt>Date</dt> <dd>2009-02-19 11:01:44 -0800 (Thu, 19 Feb 2009)</dd>
</dl>
<h3>Log Message</h3>
<pre>created py25-shogun, ticket #16852</pre>
<h3>Added Paths</h3>
<ul>
<li>trunk/dports/python/py25-shogun/</li>
<li><a href="#trunkdportspythonpy25shogunPortfile">trunk/dports/python/py25-shogun/Portfile</a></li>
<li>trunk/dports/python/py25-shogun/files/</li>
<li><a href="#trunkdportspythonpy25shogunfilespatchsrcconfigurediff">trunk/dports/python/py25-shogun/files/patch-src-configure.diff</a></li>
<li><a href="#trunkdportspythonpy25shogunfilespatchsrcliblapackcppdiff">trunk/dports/python/py25-shogun/files/patch-src-lib-lapack.cpp.diff</a></li>
</ul>
</div>
<div id="patch">
<h3>Diff</h3>
<a id="trunkdportspythonpy25shogunPortfile"></a>
<div class="addfile"><h4>Added: trunk/dports/python/py25-shogun/Portfile (0 => 47003)</h4>
<pre class="diff"><span>
<span class="info">--- trunk/dports/python/py25-shogun/Portfile (rev 0)
+++ trunk/dports/python/py25-shogun/Portfile 2009-02-19 19:01:44 UTC (rev 47003)
</span><span class="lines">@@ -0,0 +1,73 @@
</span><ins>+# -*- coding: utf-8; mode: tcl; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- vim:fenc=utf-8:ft=tcl:et:sw=4:ts=4:sts=4
+# $Id$
+
+PortSystem 1.0
+
+name py25-shogun
+version 0.6.7
+categories python science math
+maintainers jameskyle@ucla.edu
+description The machine learning toolbox's focus is on large scale kernel methods and especially on Support Vector Machines (SVM).
+long_description ${description} It provides a generic SVM object interfacing to several different SVM implementations, among them the state of the art OCAS, LibSVM , SVMLight, SVMLin and GPDT . Each of the SVMs can be combined with a variety of kernels. The toolbox not only provides efficient implementations of the most common kernels, like the Linear, Polynomial, Gaussian and Sigmoid Kernel but also comes with a number of recent string kernels as e.g. the Locality Improved , Fischer , TOP , Spectrum , Weighted Degree Kernel (with shifts).
+
+use_parallel_build yes
+use_bzip2 yes
+homepage http://www.shogun-toolbox.org
+platforms darwin
+master_sites http://shogun-toolbox.org/archives/shogun/releases/0.6/sources/
+
+checksums md5 03d2c5ae44fa7ca8baeb8c3fd2bae010 \
+ sha1 7657da29d9f9afc0c204b8f2e68c784308185a1e \
+ rmd160 c00ceceb791d2073413c089e23e361a3d584cc24
+
+distfiles shogun-${version}${extract.suffix}
+
+configure.args --disable-svm-light \
+ --interface=python \
+ --python=${prefix}/bin/python2.5 \
+ --libs=${prefix}/lib \
+ --includes=${prefix}/include \
+ --cxx=${prefix}/bin/g++-mp-4.3 \
+ --cc=${prefix}/bin/gcc-mp-4.3 \
+ --install-path=${prefix} \
+ --enable-readline \
+ --destdir=${destroot}
+
+worksrcdir shogun-${version}/src
+
+# default_variants +atlas +glpk +lp_solve
+default_variants +glpk +lp_solve +atlas
+
+depends_lib port:python25 \
+ port:py25-numpy \
+ port:gcc43 \
+ port:readline \
+ port:py25-setuptools
+
+
+patchfiles \
+ patch-src-configure.diff \
+ patch-src-lib-lapack.cpp.diff
+
+variant cplex description {enable Multiple Kernel Learning CPLEX(tm)} {
+ configure.args-append --enable-cplex
+}
+
+variant python description {build the python interface} {
+}
+
+variant atlas description {use the fast atlas and lapack libraries} {
+ depends_lib-append port:atlas
+}
+
+variant glpk description {enable support for the GNU Linear Programming Kit} {
+ depends_lib-append port:glpk
+}
+
+variant lp_solve description {enable support for the lp_solve library} {
+ depends_lib-append port:lp_solve
+}
+
+post-clean {
+ ui_msg "Make sure that /opt/local/lib is in your DYLD_LIBRARY_PATH or the sg module will not load properly!"
+}
</ins><span class="cx">Property changes on: trunk/dports/python/py25-shogun/Portfile
</span><span class="cx">___________________________________________________________________
</span></span></pre></div>
<a id="svnkeywords"></a>
<div class="addfile"><h4>Added: svn:keywords</h4></div>
<a id="svneolstyle"></a>
<div class="addfile"><h4>Added: svn:eol-style</h4></div>
<a id="trunkdportspythonpy25shogunfilespatchsrcconfigurediff"></a>
<div class="addfile"><h4>Added: trunk/dports/python/py25-shogun/files/patch-src-configure.diff (0 => 47003)</h4>
<pre class="diff"><span>
<span class="info">--- trunk/dports/python/py25-shogun/files/patch-src-configure.diff (rev 0)
+++ trunk/dports/python/py25-shogun/files/patch-src-configure.diff 2009-02-19 19:01:44 UTC (rev 47003)
</span><span class="lines">@@ -0,0 +1,61 @@
</span><ins>+diff -Naur configure configure
+--- configure 2008-11-25 20:28:41.000000000 -0800
++++ configure 2009-01-12 07:53:52.000000000 -0800
+@@ -5,7 +5,7 @@
+ [ -n "$VERSION" ] && echo "Running configure for SHOGUN version $VERSION"
+
+ # some hopefully reasonable defaults
+-MAKEDEPEND="gcc -MM"
++MAKEDEPEND="/opt/local/bin/gcc-mp-4.3 -MM"
+ MAKEDEPENDOPTS=""
+ SRCDIR="`dirname $0`"
+ EXT_SRC_HEADER=h
+@@ -63,7 +63,7 @@
+ _hmmdebug=no
+ _pathdebug=no
+ _profile=no
+-_prefix="/usr/local"
++_prefix="/opt/local"
+ _destdir="/"
+ _bindir=""
+ _datadir=""
+@@ -385,8 +385,8 @@
+ if test -f "$TMPO"
+ then
+ echo >> "$TMPLOG"
+- echo "ldd $TMPO" >> "$TMPLOG"
+- ( ldd "$TMPO" ) >> "$TMPLOG" 2>&1
++ echo "otool -L $TMPO" >> "$TMPLOG"
++ ( otool -L "$TMPO" ) >> "$TMPLOG" 2>&1
+ else
+ echo "no object file created" >> "$TMPLOG"
+ fi
+@@ -405,8 +405,8 @@
+ if test -f "$TMPO"
+ then
+ echo >> "$TMPLOG"
+- echo "ldd $TMPO" >> "$TMPLOG"
+- ( ldd "$TMPO" ) >> "$TMPLOG" 2>&1
++ echo "otool -L $TMPO" >> "$TMPLOG"
++ ( otool -L "$TMPO" ) >> "$TMPLOG" 2>&1
+ else
+ echo "no object file created" >> "$TMPLOG"
+ fi
+@@ -2391,7 +2391,7 @@
+ LINKFLAGS="-bundle -Wl,-flat_namespace -L`octave-config -p OCTLIBDIR` -loctinterp -loctave -lcruft $LINKFLAGS"
+ else
+ OCTLIBDIR=`octave-config -p OCTLIBDIR`
+- LINKFLAGS="-shared -L $OCTLIBDIR -loctinterp -loctave -lcruft $LINKFLAGS"
++ LINKFLAGS="-shared -L$OCTLIBDIR -loctinterp -loctave -lcruft $LINKFLAGS"
+ fi
+ TARGET="sg.oct"
+ INCLUDES="$INCLUDES -I`octave-config -p OCTINCLUDEDIR` -I`octave-config -p INCLUDEDIR`"
+@@ -2667,7 +2667,7 @@
+ }
+ EOF
+ echocheck "lpsolve Developer Files"
+- LPSOLVELINKFLAGS="-L /usr/lib/lp_solve -llpsolve55"
++ LPSOLVELINKFLAGS="-L/opt/local/lib/ -llpsolve55"
+ if cc_check $LPSOLVELINKFLAGS
+ then
+ echores "yes"
</ins></span></pre></div>
<a id="trunkdportspythonpy25shogunfilespatchsrcliblapackcppdiff"></a>
<div class="addfile"><h4>Added: trunk/dports/python/py25-shogun/files/patch-src-lib-lapack.cpp.diff (0 => 47003)</h4>
<pre class="diff"><span>
<span class="info">--- trunk/dports/python/py25-shogun/files/patch-src-lib-lapack.cpp.diff (rev 0)
+++ trunk/dports/python/py25-shogun/files/patch-src-lib-lapack.cpp.diff 2009-02-19 19:01:44 UTC (rev 47003)
</span><span class="lines">@@ -0,0 +1,11 @@
</span><ins>+--- lib/lapack.cpp.old 2009-01-24 16:23:26.000000000 -0800
++++ lib/lapack.cpp 2009-01-24 16:23:39.000000000 -0800
+@@ -18,7 +18,7 @@
+ #include "lib/common.h"
+ #include "lib/io.h"
+
+-#if defined(HAVE_MKL) || defined(HAVE_ACML) || defined(DARWIN)
++#if defined(HAVE_MKL) || defined(HAVE_ACML)
+ #define DSYEV dsyev
+ #define DGESVD dgesvd
+ #define DPOSV dposv
</ins></span></pre>
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