[69427] trunk/dports/science/pymol

[Ryan Schmidt]

On Jul 5, 2010, at 14:51, macsforever2000 at macports.org wrote:

> Revision: 69427
>          http://trac.macports.org/changeset/69427
> Author:   macsforever2000 at macports.org
> Date:     2010-07-05 12:51:09 -0700 (Mon, 05 Jul 2010)
> Log Message:
> -----------
> Maintainer Update to version 1.3. Added gcc45 variant. (#25498)


> +--- modules/pmg_tk/startup/apbs_tools.py.orig	2010-07-02 18:40:05.000000000 -0400
> ++++ modules/pmg_tk/startup/apbs_tools.py	2010-07-02 18:41:40.000000000 -0400
> +@@ -183,6 +183,11 @@
> +         searchDirs.append("/tmp")
> +         searchDirs.append(".")
> + 
> ++    # This must come before /opt/local/bin (which may also be in PATH) in
> ++    # order for our pdb2pqr importing to work
> ++    # correctly. /opt/local/bin/pdb2pqr just calls through to this.
> ++    searchDirs.append(os.path.join("/opt", "local", "share", "pdb2pqr"))

You cannot hardcode /opt/local here; you must ensure the current value of ${prefix} is used.