pymol crashing under Qt on Catalina

Jack Howarth howarth.at.macports at gmail.com
Sun Oct 13 13:56:31 UTC 2019


Chris,
     This is a fresh build of all the MacPorts packages from last night's
port files using Xcode 11.1.
              Jack

On Sun, Oct 13, 2019 at 9:31 AM Chris Jones <jonesc at hep.phy.cam.ac.uk>
wrote:

> Hi,
>
> What Xcode version are you using ? If 11.0, first try updating to 11.1 and
> then rebuild the various ports (including python).
>
> Chris
>
> > On 13 Oct 2019, at 1:52 pm, Jack Howarth <howarth.at.macports at gmail.com>
> wrote:
> >
> > 
> >       The +python37 variant of pymol runs fine under its Qt interface on
> Catalina, however the stock +python27 variant crashes Qt as follows...
> >
> > Process:               Python [46230]
> > Path:
> /opt/local/Library/Frameworks/Python.framework/Versions/2.7/Resources/Python.app/Contents/MacOS/Python
> > Identifier:            Python
> > Version:               2.7.16 (2.7.16)
> > Code Type:             X86-64 (Native)
> > Parent Process:        zsh [907]
> > Responsible:           Terminal [342]
> > User ID:               501
> >
> > Date/Time:             2019-10-13 08:42:10.315 -0400
> > OS Version:            Mac OS X 10.15 (19A583)
> > Report Version:        12
> > Anonymous UUID:        4A09CC71-7509-3F2D-8C77-BB546FDAFB8D
> >
> > Sleep/Wake UUID:       A3189974-D375-47A3-B65F-45F7E7DE5271
> >
> > Time Awake Since Boot: 16000 seconds
> > Time Since Wake:       12000 seconds
> >
> > System Integrity Protection: disabled
> >
> > Crashed Thread:        0  Dispatch queue: com.apple.main-thread
> >
> > Exception Type:        EXC_BAD_ACCESS (SIGSEGV)
> > Exception Codes:       KERN_INVALID_ADDRESS at 0xffffffffffffffff
> > Exception Note:        EXC_CORPSE_NOTIFY
> >
> > Termination Signal:    Segmentation fault: 11
> > Termination Reason:    Namespace SIGNAL, Code 0xb
> > Terminating Process:   exc handler [46230]
> >
> > The entire crash report is attached. Any idea what is going on here as
> it seems to be specific to python2.7?
> >           Jack
> >
> >
> > <pymol_python27_crash.log>
>
>
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